View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15861_low_2 (Length: 508)
Name: NF15861_low_2
Description: NF15861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15861_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 136 - 495
Target Start/End: Complemental strand, 36770271 - 36769912
Alignment:
| Q |
136 |
gaagggatcttacatgcatgcattgatctttagagaataaatgcataatttcattagtacacatgcatgcatataaagctatcaactccagaacaagcac |
235 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36770271 |
gaagggatcttacatgcatccattgatctttagagaataaatgcataatttcattagtacacatgcatgcatataaagctatcaactccagaacaagcac |
36770172 |
T |
|
| Q |
236 |
atgcaagcacatagctctaatttgagaagatgttctcccatcaaaactagaaatctaagacaagattaaccaaacttgagggagaagatgatgatttcaa |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36770171 |
atgcaagcacatagctctaatttgagaagatgttctcccatcaaaactagaaatctaagacaagactaaccaaacttgagggagaagatgatgatttcaa |
36770072 |
T |
|
| Q |
336 |
aaaacttcaccttagcctctttggttttctgtctctctctagttcaagccgagcatgaggttgtagtgtgtatctttctttatcttccagagagacattg |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36770071 |
aaaacttcaccttagcctctttggttttctgtctctctctagttcaagccgagcatgaggttgtagtgtgtatctttctttatcttccagagagacattg |
36769972 |
T |
|
| Q |
436 |
tagaatagaagtggcatatgttagctgatatttttccctttttaccctcagaagtataat |
495 |
Q |
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||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36769971 |
tagtataaaagtggaatatgttagctgatatttttccctttttaccctcagaagtataat |
36769912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 93 - 330
Target Start/End: Complemental strand, 36746846 - 36746613
Alignment:
| Q |
93 |
aattacatgcataaaactgattcttacatgcattgannnnnnn-gaagggatcttacatgcatgcattgatctttagagaataaatgcataatttcatta |
191 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746846 |
aattacatgcataaaactgattcttacatgcattgattttttctgaagggatcttacatgcatgcattgatctttagagaataaatgcataatttcatta |
36746747 |
T |
|
| Q |
192 |
gtacacatgcatgcatataaagctatcaactccagaacaagcacatgcaagcacatagctctaatttgagaagatgttctcccatcaaaactagaaatct |
291 |
Q |
| |
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|| || ||||||| | ||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||| ||||||||| |
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| T |
36746746 |
gtgcatatgcatgta-----agctaccaactccagaacaaacacatgcaagcacatagttctaattttagaagatgttctcacatcaaaagtagaaatct |
36746652 |
T |
|
| Q |
292 |
aagacaagattaaccaaacttgagggagaagatgatgat |
330 |
Q |
| |
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||||||||| | ||||||||| | | ||| ||||||||| |
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| T |
36746651 |
aagacaagactcaccaaacttaaagaagatgatgatgat |
36746613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 143 - 320
Target Start/End: Complemental strand, 36747044 - 36746874
Alignment:
| Q |
143 |
tcttacatgcatgcattgatctttagagaataaatgcataatttcattagtacacatgcatgcatataaagctatcaactccagaacaagcacatgcaag |
242 |
Q |
| |
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|||||||||||| | |||||||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||| |||| |||||||||||||||| |
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| T |
36747044 |
tcttacatgcattctttgatctttaaagaataaatgaataatttaattagtacacatgcat----ataaagctatcaagtccacaacaagcacatgcaag |
36746949 |
T |
|
| Q |
243 |
cacatagctctaatttgagaagatgttctcccatcaaaactagaaatctaagacaagattaaccaaacttgagggaga |
320 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| ||| | ||||||||||||||| | ||||||||||||||||| |
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| T |
36746948 |
cacatagctctaatttgagaagatgttctcacataaaa---aaaaatctaagacaagactcaccaaacttgagggaga |
36746874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 169 - 330
Target Start/End: Complemental strand, 36765555 - 36765399
Alignment:
| Q |
169 |
agaataaatgcataatttcattagtacacatgcatgcatataaagctatcaactccagaacaagcacatgcaagcacatagctctaatttgagaagatgt |
268 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
36765555 |
agaataaatgcataatttcattagtatacatgcatgca-----agctatcaactccagaacaagcacatgcaagcacatagttctaattttagaagatgt |
36765461 |
T |
|
| Q |
269 |
tctcccatcaaaactagaaatctaagacaagattaaccaaacttgagggagaagatgatgat |
330 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||| | ||||||||| | ||| || |||||||| |
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|
| T |
36765460 |
tctcacatcaaaagtagaaatctaaaacaagactcaccaaacttaaaggataaaatgatgat |
36765399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 201 - 327
Target Start/End: Complemental strand, 36754397 - 36754277
Alignment:
| Q |
201 |
catgcatataaagctatcaactccagaacaagcacatgcaagcacatagctctaatttgagaagatgttctcccatcaaaactagaaatctaagacaaga |
300 |
Q |
| |
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||||||||||||| ||||||||||| | ||||||||| | |||||||||||| |||||||||||||| |||||||| || ||||||||||||||| |
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| T |
36754397 |
catgcatataaagatatcaactccacagcaagcacat------atatagctctaattggagaagatgttctcacatcaaaagtaaaaatctaagacaaga |
36754304 |
T |
|
| Q |
301 |
ttaaccaaacttgagggagaagatgat |
327 |
Q |
| |
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| ||||||||||| ||||||||||| |
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| T |
36754303 |
ctcaccaaacttgatagagaagatgat |
36754277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 436
Target Start/End: Complemental strand, 36746605 - 36746538
Alignment:
| Q |
369 |
tctctctagttcaagccgagcatgaggttgtagtgtgtatctttctttatcttccagagagacattgt |
436 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||| ||||||||| | || |||||||||||||| |
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| T |
36746605 |
tctctctagttcaagcggagcatgaggctgttgtgtgtctctttctttgttttgcagagagacattgt |
36746538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 36765609 - 36765568
Alignment:
| Q |
87 |
tggtggaattacatgcataaaactgattcttacatgcattga |
128 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36765609 |
tggtggaattacatgcataaatctgattcttacatgcattga |
36765568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 36754250 - 36754214
Alignment:
| Q |
88 |
ggtggaattacatgcataaaactgattcttacatgca |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
36754250 |
ggtggaattacatgcataaaactgattcttacatgca |
36754214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 436
Target Start/End: Complemental strand, 36765390 - 36765323
Alignment:
| Q |
369 |
tctctctagttcaagccgagcatgaggttgtagtgtgtatctttctttatcttccagagagacattgt |
436 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||| |||||| ||||||||| | || |||||||||||||| |
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|
| T |
36765390 |
tctctctaattcaagctgagcatgaggctgttgtgtgtctctttctttgttttgcagagagacattgt |
36765323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 36754219 - 36754185
Alignment:
| Q |
152 |
catgcattgatctttagagaataaatgcataattt |
186 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |
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|
| T |
36754219 |
catgcaatgatctttagagaataaatgcataattt |
36754185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 36754482 - 36754434
Alignment:
| Q |
76 |
agtaaaatgtatggtggaattacatgcataaaactgattcttacatgcat |
125 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||||| |||||||||||||| |
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|
| T |
36754482 |
agtaaaatgtctggtggaactacatgcat-aaacttattcttacatgcat |
36754434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 33519440 - 33519380
Alignment:
| Q |
5 |
aaccttgccatcagaagagctgacaaagttactaagaaagttctatatagccattttcttt |
65 |
Q |
| |
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|||||||||||||||||||| || |||||||||||||||| | ||| ||||||||||||| |
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|
| T |
33519440 |
aaccttgccatcagaagagcggaaaaagttactaagaaagaacgatagagccattttcttt |
33519380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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