View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15861_low_4 (Length: 287)

Name: NF15861_low_4
Description: NF15861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15861_low_4
NF15861_low_4
[»] chr1 (15 HSPs)
chr1 (124-225)||(10597638-10597739)
chr1 (203-264)||(4150472-4150533)
chr1 (198-246)||(15752022-15752070)
chr1 (203-255)||(47279161-47279213)
chr1 (203-246)||(1547285-1547328)
chr1 (203-246)||(2959746-2959789)
chr1 (203-246)||(10182143-10182186)
chr1 (203-246)||(16415643-16415686)
chr1 (203-246)||(38823212-38823255)
chr1 (203-246)||(43579244-43579287)
chr1 (204-246)||(42663788-42663830)
chr1 (196-246)||(42721030-42721080)
chr1 (203-248)||(14758039-14758084)
chr1 (203-248)||(31621686-31621731)
chr1 (199-248)||(33725733-33725782)
[»] chr8 (12 HSPs)
chr8 (200-264)||(6446691-6446755)
chr8 (197-246)||(23176766-23176815)
chr8 (203-246)||(6098664-6098707)
chr8 (199-246)||(7891094-7891141)
chr8 (203-246)||(13307624-13307667)
chr8 (197-248)||(33906219-33906270)
chr8 (203-246)||(34894968-34895011)
chr8 (204-246)||(5018013-5018055)
chr8 (203-241)||(7998364-7998402)
chr8 (201-246)||(35735987-35736032)
chr8 (203-239)||(16447028-16447064)
chr8 (203-239)||(39099262-39099298)
[»] chr3 (11 HSPs)
chr3 (203-246)||(35844319-35844362)
chr3 (203-246)||(40640637-40640680)
chr3 (203-246)||(46297902-46297945)
chr3 (197-246)||(4015447-4015496)
chr3 (203-248)||(22450961-22451006)
chr3 (203-246)||(21193599-21193642)
chr3 (203-246)||(47930669-47930712)
chr3 (203-246)||(51213121-51213164)
chr3 (204-246)||(4556543-4556585)
chr3 (201-246)||(53818512-53818557)
chr3 (198-246)||(53811979-53812027)
[»] chr6 (11 HSPs)
chr6 (203-248)||(20768088-20768133)
chr6 (201-246)||(30353497-30353542)
chr6 (203-246)||(8513235-8513278)
chr6 (200-246)||(6088907-6088953)
chr6 (204-258)||(25440961-25441015)
chr6 (203-246)||(3880078-3880121)
chr6 (203-246)||(4318962-4319005)
chr6 (203-246)||(11084155-11084198)
chr6 (203-246)||(19631751-19631794)
chr6 (203-246)||(24662193-24662236)
chr6 (198-248)||(7235171-7235221)
[»] chr4 (20 HSPs)
chr4 (201-246)||(27396616-27396661)
chr4 (203-248)||(28003150-28003195)
chr4 (202-246)||(20097494-20097538)
chr4 (203-246)||(35021201-35021244)
chr4 (199-246)||(36493854-36493901)
chr4 (203-246)||(38812263-38812306)
chr4 (196-246)||(2266859-2266909)
chr4 (200-246)||(47253748-47253794)
chr4 (197-246)||(33255495-33255544)
chr4 (203-248)||(38011856-38011901)
chr4 (197-246)||(38811809-38811858)
chr4 (203-246)||(2704514-2704557)
chr4 (203-246)||(7152272-7152315)
chr4 (203-246)||(47073660-47073703)
chr4 (203-246)||(51204581-51204624)
chr4 (199-246)||(52516595-52516642)
chr4 (203-246)||(55241270-55241313)
chr4 (203-248)||(35025752-35025797)
chr4 (200-244)||(33341394-33341438)
chr4 (198-246)||(34948263-34948311)
[»] chr2 (12 HSPs)
chr2 (201-246)||(41643872-41643917)
chr2 (201-244)||(36641986-36642029)
chr2 (203-246)||(41465511-41465554)
chr2 (205-246)||(18947601-18947642)
chr2 (203-255)||(43446456-43446508)
chr2 (203-246)||(4166924-4166967)
chr2 (203-246)||(4264235-4264278)
chr2 (203-246)||(13711466-13711509)
chr2 (203-246)||(18494426-18494469)
chr2 (203-246)||(19313854-19313897)
chr2 (203-244)||(31570894-31570935)
chr2 (194-246)||(35958902-35958954)
[»] chr5 (13 HSPs)
chr5 (203-246)||(8742017-8742060)
chr5 (203-246)||(22616496-22616539)
chr5 (188-246)||(25501056-25501114)
chr5 (203-248)||(14409454-14409499)
chr5 (203-246)||(7693232-7693275)
chr5 (199-246)||(11898000-11898047)
chr5 (203-246)||(12910352-12910395)
chr5 (195-246)||(15724484-15724535)
chr5 (203-246)||(19119861-19119904)
chr5 (203-246)||(35826613-35826656)
chr5 (201-245)||(5837555-5837599)
chr5 (203-255)||(25513773-25513825)
chr5 (203-255)||(26411295-26411347)
[»] chr7 (14 HSPs)
chr7 (200-246)||(8299189-8299235)
chr7 (203-241)||(10359360-10359398)
chr7 (203-248)||(48928702-48928747)
chr7 (202-246)||(3953732-3953776)
chr7 (204-244)||(10675337-10675377)
chr7 (198-246)||(23402374-23402422)
chr7 (203-243)||(26524471-26524511)
chr7 (198-246)||(27421520-27421568)
chr7 (203-246)||(241024-241067)
chr7 (203-246)||(4582896-4582939)
chr7 (203-246)||(5657622-5657665)
chr7 (203-246)||(18797306-18797349)
chr7 (201-246)||(23111165-23111210)
chr7 (201-246)||(25691686-25691731)
[»] scaffold0002 (1 HSPs)
scaffold0002 (203-246)||(136-179)
[»] scaffold0318 (1 HSPs)
scaffold0318 (201-244)||(11906-11950)
[»] scaffold0312 (1 HSPs)
scaffold0312 (203-255)||(9129-9181)


Alignment Details
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 124 - 225
Target Start/End: Original strand, 10597638 - 10597739
Alignment:
Q  124 gagggaatatgcatgtgtataaatgatatgctaaaataattgtgactattcaaaactccatcccacatattatatatgaaaaattctatggtgaagtcat 223  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || ||| ||||||||||||||||| |||| |||||||||    
T  10597638 gagggaatatgcatgtgtataaatgatatgctaaaatagttgtgattattcaaaactccacccgacagattatatatgaaaaattttatgatgaagtcat 10597737  T
Q  224 ga 225  Q
    ||    
T  10597738 ga 10597739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 4150533 - 4150472
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtcatgagaattacttcaaa 264  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4150533 aaaattctatggtgaagtcatgataatgacttttctggtgaagtcatgagaattacttcaaa 4150472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 15752022 - 15752070
Alignment:
Q  198 tatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  15752022 tatgaaaaattctatggtgaagtcatgagaatgacttttttggtgaagt 15752070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 47279161 - 47279213
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtcatgagaat 255  Q
    |||| |||||||||||||||||| ||| |||||| ||||||||||||||||||    
T  47279161 aaaaatctatggtgaagtcatgagaatgacttttttggtgaagtcatgagaat 47279213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 1547285 - 1547328
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  1547285 aaaattctatggtgaagtcatgagaatgacttttctggtgaagt 1547328  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 2959746 - 2959789
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||    
T  2959746 aaaattctatggtgaagtcatgaaaatgacttttctgatgaagt 2959789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 10182186 - 10182143
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||    
T  10182186 aaaattctatggtgaagtcatgaaaatgacttttttggtgaagt 10182143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 16415643 - 16415686
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||||    
T  16415643 aaaattctaaggtgaagtcatgagaatgacttttctggtgaagt 16415686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 38823212 - 38823255
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||||    
T  38823212 aaaattctatggtgaagtcatgagaatgacttttctggttaagt 38823255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 43579244 - 43579287
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||    
T  43579244 aaaattctatggtgaagtcatgagaatgacttttctagtgaagt 43579287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 42663830 - 42663788
Alignment:
Q  204 aaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||||||||||||||||| |||||| | |||||||    
T  42663830 aaattctatggtgaagtcatgataatgacttttttagtgaagt 42663788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 42721030 - 42721080
Alignment:
Q  196 tatatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||| ||||||||||||||||||||||| ||| | |||| |||||||||    
T  42721030 tatatggaaaattctatggtgaagtcatgaaaatgatttttttggtgaagt 42721080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 14758039 - 14758084
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtca 248  Q
    |||||| || ||||||||||||| ||| ||||||||||||||||||    
T  14758039 aaaattttacggtgaagtcatgagaatgacttttctggtgaagtca 14758084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 31621731 - 31621686
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtca 248  Q
    ||||||||| ||||||||||||| ||| |||||||| |||||||||    
T  31621731 aaaattctacggtgaagtcatgagaatgacttttctagtgaagtca 31621686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 33725782 - 33725733
Alignment:
Q  199 atgaaaaattctatggtgaagtcatgataatcacttttctggtgaagtca 248  Q
    ||||||||||||||||| |||||| || ||| |||||||| |||||||||    
T  33725782 atgaaaaattctatggtaaagtcaagagaatgacttttctagtgaagtca 33725733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 6446755 - 6446691
Alignment:
Q  200 tgaaaaattctatggtgaagtcatgataatcacttttctggtgaagtcatgagaattacttcaaa 264  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6446755 tgaaaaattctatggtgaagtcatgataatgacttttctggtgaagtcatgagaattacttcaaa 6446691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 23176815 - 23176766
Alignment:
Q  197 atatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||| ||||||||||||||||||| ||| |||||| |||||||||    
T  23176815 atatgaaaatttctatggtgaagtcatgaaaatgacttttttggtgaagt 23176766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 6098707 - 6098664
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||    
T  6098707 aaaattctatggtgaagtcatgaaaataacttttttggtgaagt 6098664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 7891141 - 7891094
Alignment:
Q  199 atgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||||||| ||| |||||| | |||||||    
T  7891141 atgaaaaattctatggtgaagtcatgagaatgactttttttgtgaagt 7891094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 13307624 - 13307667
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||    
T  13307624 aaaattctatggtgaagtcatgagaatgatttttctggtgaagt 13307667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 33906219 - 33906270
Alignment:
Q  197 atatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagtca 248  Q
    ||||| |||||||||||||||| | |||| ||| ||||||||||||||||||    
T  33906219 atatggaaaattctatggtgaaattatgagaatgacttttctggtgaagtca 33906270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 34894968 - 34895011
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||    
T  34894968 aaaattctatggtgaagtcatgaaaatgacttttctgatgaagt 34895011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 5018013 - 5018055
Alignment:
Q  204 aaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||||||||||||||||| |||||| | |||||||    
T  5018013 aaattctatggtgaagtcatgataatgacttttttagtgaagt 5018055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 7998364 - 7998402
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggt 241  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  7998364 aaaattctatggtgaagtcatgagaatgacttttctggt 7998402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 35736032 - 35735987
Alignment:
Q  201 gaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| | ||| |||||| |||||||||    
T  35736032 gaaaaattctatggtgaagtcattagaatgacttttttggtgaagt 35735987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 16447064 - 16447028
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctg 239  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  16447064 aaaattctatggtgaagtcatgaaaatgacttttctg 16447028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 39099298 - 39099262
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctg 239  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  39099298 aaaattctatggtgaagtcatgagaatgacttttctg 39099262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 35844319 - 35844362
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  35844319 aaaattctatggtgaagtcatgataatgacttttctggtgaagt 35844362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 40640680 - 40640637
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  40640680 aaaattctatggtgaagtcatgagaatgacttttctggtgaagt 40640637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 46297945 - 46297902
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  46297945 aaaattctatggtgaagtcatgaaaatgacttttctggtgaagt 46297902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 4015447 - 4015496
Alignment:
Q  197 atatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||| ||||||    
T  4015447 atatggaaaattctatggtgaagtcatgagaatgacttttctgatgaagt 4015496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 22450961 - 22451006
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtca 248  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||    
T  22450961 aaaattctatggtgaagtcatgagaatgatttttctggtgaagtca 22451006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 21193599 - 21193642
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||||    
T  21193599 aaaattctatggtaaagtcatgagaatgacttttctggtgaagt 21193642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 47930712 - 47930669
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||    
T  47930712 aaaattctatggtgaagtcatgaaaatgatttttctggtgaagt 47930669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 51213164 - 51213121
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||    
T  51213164 aaaattctatggtgaagtcatgagaatgacttttttggtgaagt 51213121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 4556543 - 4556585
Alignment:
Q  204 aaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||||||||||||| ||| |||||||| |||||||    
T  4556543 aaattctatggtgaagtcatgaaaatgacttttctcgtgaagt 4556585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 53818557 - 53818512
Alignment:
Q  201 gaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||| |||||||||||||||| ||| | ||||||||||||||    
T  53818557 gaaaaattttatggtgaagtcatgagaatgatttttctggtgaagt 53818512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 53812027 - 53811979
Alignment:
Q  198 tatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||| ||||||||| ||||||||||||| ||| ||||||||| ||||||    
T  53812027 tatggaaaattctacggtgaagtcatgagaatgacttttctgatgaagt 53811979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 20768088 - 20768133
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtca 248  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  20768088 aaaattctatggtgaagtcatgagaatgacttttctggtgaagtca 20768133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 30353542 - 30353497
Alignment:
Q  201 gaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  30353542 gaaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 30353497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 8513235 - 8513278
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  8513235 aaaattctatggtgaagtcatgagaatgacttttctggtgaagt 8513278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 6088907 - 6088953
Alignment:
Q  200 tgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||||||||||||||||| ||| | ||||||||||||||    
T  6088907 tgaaaaattctatggtgaagtcatgagaatgatttttctggtgaagt 6088953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 25440961 - 25441015
Alignment:
Q  204 aaattctatggtgaagtcatgataatcacttttctggtgaagtcatgagaattac 258  Q
    |||||||||||||||||| | | ||| ||||||||||||||||||| ||||||||    
T  25440961 aaattctatggtgaagtcgttaaaatgacttttctggtgaagtcattagaattac 25441015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 3880121 - 3880078
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||||||||||| || ||| ||||||||||||||||    
T  3880121 aaaattctatggtgaagtcacgagaatgacttttctggtgaagt 3880078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 4319005 - 4318962
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||    
T  4319005 aaaattctatggtgaagtcatgagaatgacttttttggtgaagt 4318962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 11084198 - 11084155
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||||    
T  11084198 aaaattctatggtgaagtcatgaaaataacttttctggtaaagt 11084155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 19631751 - 19631794
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||    
T  19631751 aaaattctatggtgaagtcataagaatgacttttctggtgaagt 19631794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 24662236 - 24662193
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||    
T  24662236 aaaattctatggtaaagtcatgataatgacttttctagtgaagt 24662193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 7235221 - 7235171
Alignment:
Q  198 tatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagtca 248  Q
    |||| |||||||||||||||||| |||| ||| ||||||| ||||||||||    
T  7235221 tatggaaaattctatggtgaagttatgagaatgacttttccggtgaagtca 7235171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 27396616 - 27396661
Alignment:
Q  201 gaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  27396616 gaaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 27396661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 28003195 - 28003150
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtca 248  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  28003195 aaaattctatggtgaagtcatgagaatgacttttctggtgaagtca 28003150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 20097538 - 20097494
Alignment:
Q  202 aaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  20097538 aaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 20097494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 35021244 - 35021201
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  35021244 aaaattctatggtgaagtcatgaaaatgacttttctggtgaagt 35021201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 36493901 - 36493854
Alignment:
Q  199 atgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  36493901 atgaaaaattctatggtgaagtcatgaaaataacttttttggtgaagt 36493854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 38812306 - 38812263
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  38812306 aaaattctatggtgaagtcatgagaatgacttttctggtgaagt 38812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 2266909 - 2266859
Alignment:
Q  196 tatatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||| |||||||| |||||||||||||||||||| |||||||| |||||||    
T  2266909 tataagaaaaattatatggtgaagtcatgataatgacttttctagtgaagt 2266859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 47253748 - 47253794
Alignment:
Q  200 tgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||||||||||||||||| ||| |||||| |||||||||    
T  47253748 tgaaaaattctatggtgaagtcatgagaatgacttttttggtgaagt 47253794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 33255495 - 33255544
Alignment:
Q  197 atatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||| ||||||||||||| || |||||||||| |||||||||    
T  33255495 atatgaaaaattatatggtgaagtcacgagaatcacttttttggtgaagt 33255544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 38011856 - 38011901
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtca 248  Q
    |||||||||||||||| |||||| ||| ||||||||||||||||||    
T  38011856 aaaattctatggtgaaatcatgagaatgacttttctggtgaagtca 38011901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 38811809 - 38811858
Alignment:
Q  197 atatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||| ||||||||||||||||||||||| ||| | ||||||||||||||    
T  38811809 atatggaaaattctatggtgaagtcatgagaatgatttttctggtgaagt 38811858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 2704514 - 2704557
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||    
T  2704514 aaaattttatggtgaagtcatgaaaatgacttttctggtgaagt 2704557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 7152315 - 7152272
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||||||||||||| |||| ||||||||||| ||||    
T  7152315 aaaattctatggtgaagtcatgctaatgacttttctggtaaagt 7152272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 47073703 - 47073660
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||| ||||||||||||| |||||| |||||||||    
T  47073703 aaaattctatggtaaagtcatgataatgacttttttggtgaagt 47073660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 51204581 - 51204624
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||    
T  51204581 aaaattctatggtgaagtcataaaaatgacttttctggtgaagt 51204624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 52516595 - 52516642
Alignment:
Q  199 atgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||| |||||||||||||||| ||| |||||| |||||||||    
T  52516595 atgaaaaattttatggtgaagtcatgagaatgacttttatggtgaagt 52516642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 55241313 - 55241270
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||    
T  55241313 aaaattctatggtgaagtcatgagaatgacttttctagtgaagt 55241270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 35025797 - 35025752
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtca 248  Q
    ||||||||||| ||||||||||| ||| | ||||||||||||||||    
T  35025797 aaaattctatgctgaagtcatgaaaatgatttttctggtgaagtca 35025752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 33341394 - 33341438
Alignment:
Q  200 tgaaaaattctatggtgaagtcatgataatcacttttctggtgaa 244  Q
    ||||||||||||| |||||||||||| ||| | ||||||||||||    
T  33341394 tgaaaaattctatagtgaagtcatgagaatgatttttctggtgaa 33341438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 34948311 - 34948263
Alignment:
Q  198 tatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||| |||||| |||||||||||||||| ||| |||||||||| |||||    
T  34948311 tatgtaaaattttatggtgaagtcatgagaatgacttttctggcgaagt 34948263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 41643872 - 41643917
Alignment:
Q  201 gaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||    
T  41643872 gaaaaattctatggtgaagtcatgataatgacttttttggtgaagt 41643917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 36641986 - 36642029
Alignment:
Q  201 gaaaaattctatggtgaagtcatgataatcacttttctggtgaa 244  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  36641986 gaaaaattctatggtgaagtcatgagaatgacttttctggtgaa 36642029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 41465511 - 41465554
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  41465511 aaaattctatggtgaagtcatgagaatgacttttctggtgaagt 41465554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 18947642 - 18947601
Alignment:
Q  205 aattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  18947642 aattctatggtgaagtcatgaaaataacttttctggtgaagt 18947601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 43446508 - 43446456
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtcatgagaat 255  Q
    ||||||||||||||||||||||| ||| ||||||  |||||||| ||||||||    
T  43446508 aaaattctatggtgaagtcatgagaatgactttttcggtgaagttatgagaat 43446456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 4166924 - 4166967
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||||||||||| || ||| ||||||||||||||||    
T  4166924 aaaattctatggtgaagtcacgaaaatgacttttctggtgaagt 4166967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 4264278 - 4264235
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||    
T  4264278 aaaattctatggtgaagtcatcataatgacttttctggtaaagt 4264235  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 13711466 - 13711509
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||    
T  13711466 aaaattctatggtgaagtcatcagaatgacttttctggtgaagt 13711509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 18494469 - 18494426
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||    
T  18494469 aaaattctgtggtgaagtcatgaaaatgacttttctggtgaagt 18494426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 19313854 - 19313897
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||    
T  19313854 aaaattctatggtgaagtcattagaatgacttttctggtgaagt 19313897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 31570935 - 31570894
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaa 244  Q
    |||||||||||||||||| |||| ||| ||||||||||||||    
T  31570935 aaaattctatggtgaagttatgagaataacttttctggtgaa 31570894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 35958902 - 35958954
Alignment:
Q  194 tatatatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||| ||||||||||| ||||||||| | ||| |||||| |||||||||    
T  35958902 tatatatggaaaattctatgatgaagtcataaaaatgacttttttggtgaagt 35958954  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 8742060 - 8742017
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  8742060 aaaattctatggtgaagtcatgagaatgacttttctggtgaagt 8742017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 22616496 - 22616539
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  22616496 aaaattctatggtgaagtcatgaaaatgacttttctggtgaagt 22616539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 25501114 - 25501056
Alignment:
Q  188 acatattatatatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||| |||  ||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  25501114 acatattttattagaaaaattctatggtgaagtcatgagaatgacttttctggtaaagt 25501056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 14409499 - 14409454
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtca 248  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||    
T  14409499 aaaattctatggtgaagtcatgagaatgatttttctggtgaagtca 14409454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 7693232 - 7693275
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||    
T  7693232 aaaattctatggtgaagtcattaaaatgacttttctggtgaagt 7693275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 11898000 - 11898047
Alignment:
Q  199 atgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||| || ||||||||||||||||| ||||||||||| ||||    
T  11898000 atgaaaaattttagggtgaagtcatgataataacttttctggtaaagt 11898047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 12910352 - 12910395
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||    
T  12910352 aaaattctatggtgaagtcatgaaaatgacttttttggtgaagt 12910395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 15724484 - 15724535
Alignment:
Q  195 atatatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||| |||||||||||||||||| |||| ||| |||||| |||||||||    
T  15724484 atatatggaaaattctatggtgaagttatgagaatgacttttttggtgaagt 15724535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 19119861 - 19119904
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||    
T  19119861 aaaattctatggtgaagtcatgagaatgacttttgtggtgaagt 19119904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 35826656 - 35826613
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||||||| |||||| | |||||||    
T  35826656 aaaattctatggtgaagtcatgataatgactttttttgtgaagt 35826613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 5837555 - 5837599
Alignment:
Q  201 gaaaaattctatggtgaagtcatgataatcacttttctggtgaag 245  Q
    ||||||||||| |||||| |||||| ||| |||||||||||||||    
T  5837555 gaaaaattctacggtgaattcatgagaatgacttttctggtgaag 5837599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 25513773 - 25513825
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtcatgagaat 255  Q
    ||||||||||||||||||| | | ||| | ||||||||||||||||| |||||    
T  25513773 aaaattctatggtgaagtcgttaaaatgatttttctggtgaagtcattagaat 25513825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 26411295 - 26411347
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtcatgagaat 255  Q
    ||||||||||||||||||||| | ||| | |||| |||||||||||| |||||    
T  26411295 aaaattctatggtgaagtcattagaatgatttttttggtgaagtcattagaat 26411347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 8299189 - 8299235
Alignment:
Q  200 tgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| || ||| ||||||||||||||||    
T  8299189 tgaaaaattctatggtgaagtcacgaaaatgacttttctggtgaagt 8299235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 10359398 - 10359360
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggt 241  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  10359398 aaaattctatggtgaagtcatgataatgacttttctggt 10359360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 48928747 - 48928702
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtca 248  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||    
T  48928747 aaaattttatggtgaagtcatgagaatgacttttctggtgaagtca 48928702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 3953732 - 3953776
Alignment:
Q  202 aaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||| ||||||||||| ||| ||||||||||||||||    
T  3953732 aaaaattctatgatgaagtcatgagaatgacttttctggtgaagt 3953776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 10675377 - 10675337
Alignment:
Q  204 aaattctatggtgaagtcatgataatcacttttctggtgaa 244  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  10675377 aaattctatggtgaagtcatgataatgacttttctgatgaa 10675337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 23402422 - 23402374
Alignment:
Q  198 tatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||| |||||||||||| |||||||||| ||| ||||||||||||||||    
T  23402422 tatggaaaattctatggcgaagtcatgagaatgacttttctggtgaagt 23402374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 26524511 - 26524471
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtga 243  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  26524511 aaaattctatggtgaagtcatgagaatgacttttctggtga 26524471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 27421568 - 27421520
Alignment:
Q  198 tatgaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||||||||||||||| ||||||| | |||| |||||||||    
T  27421568 tatgaaaaattctatggtgaagtcgtgataatgatttttttggtgaagt 27421520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 241067 - 241024
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||    
T  241067 aaaattctatggtgaagtcatgaaaatgacttttttggtgaagt 241024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 4582896 - 4582939
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||||||||||| || ||| ||||||||||||||||    
T  4582896 aaaattctatggtgaagtcacgaaaatgacttttctggtgaagt 4582939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 5657665 - 5657622
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||    
T  5657665 aaaattctatggtgaagtcatgagaatgacttttctagtgaagt 5657622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 18797306 - 18797349
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||    
T  18797306 aaaattctatggtgaagtcatgagaatgacttttttggtgaagt 18797349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 23111165 - 23111210
Alignment:
Q  201 gaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||| |||||||||||||| ||| | ||||||||||||||    
T  23111165 gaaaaattctgtggtgaagtcatgaaaatgatttttctggtgaagt 23111210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 25691731 - 25691686
Alignment:
Q  201 gaaaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||| |||||||||||||||| ||| |||||||| |||||||    
T  25691731 gaaaaattttatggtgaagtcatgagaatgacttttctcgtgaagt 25691686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 136 - 179
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagt 246  Q
    |||||||||||||||||||| || ||| ||||||||||||||||    
T  136 aaaattctatggtgaagtcacgaaaatgacttttctggtgaagt 179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 11906 - 11950
Alignment:
Q  201 gaaaaattctatggtgaagtcatga-taatcacttttctggtgaa 244  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||    
T  11906 gaaaaattctatggtgaagtcatgagaaatgacttttctggtgaa 11950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 9181 - 9129
Alignment:
Q  203 aaaattctatggtgaagtcatgataatcacttttctggtgaagtcatgagaat 255  Q
    ||||||||||| |||||| |||| ||| |||||| || |||||||||||||||    
T  9181 aaaattctatgatgaagttatgagaatgacttttttgctgaagtcatgagaat 9129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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