View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15861_low_9 (Length: 220)
Name: NF15861_low_9
Description: NF15861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15861_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 27304465 - 27304676
Alignment:
| Q |
1 |
cactagccaatgctgccccttcatgtcctgcagcgcaacaaactttaacaacatgccttccgtacgcgacaaacccacatggacctccccctgaaccatg |
100 |
Q |
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| T |
27304465 |
cactagccagtgctgccccttcatgtcctgcagtgcaacaaactttaacaacatgccttctgtacgcgacaaacccacatggacctccccctgaaccatg |
27304564 |
T |
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| Q |
101 |
ttgcaatgggattaagactttacatggccaatcccaaactccccaagatcgtcgagatgtttgcggttgcctcaaatccatgatgaccaatctcaaactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27304565 |
ttgcaatgggattaagactttacatggccaatcccaaactcccctagatcgtcgagatgtttgcggttgcctcaaatccatgatgaccaatctcaaactc |
27304664 |
T |
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| Q |
201 |
aatcttcctgcc |
212 |
Q |
| |
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|||||||||||| |
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| T |
27304665 |
aatcttcctgcc |
27304676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 27249145 - 27249335
Alignment:
| Q |
1 |
cactagccaatgctgccccttcatgtcctgcagcgcaacaaactttaacaacatgccttccgtacgcgacaaacccacatggacc------tccccctga |
94 |
Q |
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||||||| |||||||| ||||||||||||| || ||||||||||||| || ||||| ||||||||| ||| ||||| | ||| |||||| |
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| T |
27249145 |
cactagctaatgctgctccttcatgtcctgaagtgcaacaaactttagcaccatgcgttccgtacgtaacacacccaggtccacccatctctcccccacc |
27249244 |
T |
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| Q |
95 |
accatgttgcaatgggattaagactttacatggccaatcccaaactccccaagatcgtcgagatgtttgcggttgcctcaaatccatgatg |
185 |
Q |
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| T |
27249245 |
accatgttgcaatgcggttaagactttaaatggccaatccaaaactacccaagatcgtcgagatgtttgcggttgcctcaaatccatgatg |
27249335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 27220306 - 27220480
Alignment:
| Q |
4 |
tagccaatgctgccccttcatgtcctgcagcgcaacaaactttaacaacatgccttccgtacgcgacaaacccacatggacctccccctgaaccatgttg |
103 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||| |||||||| | | |||||||| |||||||||| |
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| T |
27220306 |
tagccaatgctgccccttcatgtcctgcagtggcacaaactttaacaccatgccttccgcacgtatcaaacccaggtccatctccccctcaaccatgttg |
27220405 |
T |
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| Q |
104 |
caatgggattaagactttacatggccaatcccaaactccccaagatcgtcgagatgtttgcggttgcctcaaatc |
178 |
Q |
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| T |
27220406 |
caatagggttaagactttaaatagccaagccaaaactacgcaagatcgtcatcatgtttgcggttgcctcaaatc |
27220480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 27243176 - 27243362
Alignment:
| Q |
1 |
cactagccaatgctgccccttcatgtcctgcagcgcaacaaactttaacaacatgccttccgtacgcgacaaacccacatggacc---tccccctgaacc |
97 |
Q |
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||||||||||||||||| |||||||||||| | |||||||||||||| |||||||| ||||| ||| ||||| | ||| |||||||||||| |
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| T |
27243176 |
cactagccaatgctgccgcttcatgtcctgaaattgaacaaactttaacaccatgccttgagtacgtaacacacccaggttcaccccctccccctgaacc |
27243275 |
T |
|
| Q |
98 |
atgttgcaatgggattaagactttacatggccaatcccaaactccccaagatcgtcgagatgtttgcggttgcctcaaatccatgat |
184 |
Q |
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||||||||||| | ||||| || ||||||||||| |||| ||||||||||||||||||||| |||| ||||| ||||||||||||| |
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| T |
27243276 |
atgttgcaatgcggttaaggctatacatggccaaacccatactccccaagatcgtcgagattgttgcagttgcgtcaaatccatgat |
27243362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 14889853 - 14889725
Alignment:
| Q |
84 |
cctccccctgaaccatgttgcaatgggattaagactttacatggccaatcccaaactccccaagatcgtcgagatgtttgcggttgcctcaaatccatga |
183 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14889853 |
cctccccctgaaccatgttgcaatggggttaagactttaaatgaccaagcccgaactcaacaagatcgtcgagatgtttgcggttgcctcaaatccattg |
14889754 |
T |
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| Q |
184 |
tgaccaatctcaaactcaatcttcctgcc |
212 |
Q |
| |
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|| |||||| ||||||||||||||||||| |
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| T |
14889753 |
tggccaatcccaaactcaatcttcctgcc |
14889725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 14884285 - 14884105
Alignment:
| Q |
4 |
tagccaatgctgccccttcatgtcctgcagcgcaacaaactttaacaacatgccttccgtacgcgacaaacccacatggacc---tccccctgaaccatg |
100 |
Q |
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|||||||| ||||||||||||||||| || ||||||||||||| || ||||| |||||||| ||||||||| | ||| ||||||||| ||||| |
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| T |
14884285 |
tagccaattctgccccttcatgtcctcaagtgcaacaaactttagcaccatgcattccgtacctaacaaacccaggtccaccccctccccctgacccatg |
14884186 |
T |
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| Q |
101 |
ttgcaatgggattaagactttacatggccaatcccaaactccccaagatcgtcgagatgtttgcggttgcctcaaatccat |
181 |
Q |
| |
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|||||||||| |||||||||| |||||||| | ||||||| ||||| || |||||||||| |||||| ||| |||| |
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| T |
14884185 |
ttgcaatgggtataagactttagatggccaaatcaaaactcctgaagatattcaagatgtttgctattgccttaaacccat |
14884105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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