View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15862_high_2 (Length: 449)
Name: NF15862_high_2
Description: NF15862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15862_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 127 - 433
Target Start/End: Original strand, 8937290 - 8937580
Alignment:
| Q |
127 |
tttaaaaattgtgtattcaatatatttttagatgcatattcaatatcttaaaggattaaaatccagtaaattaaacattttatctggggttggtatcaca |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8937290 |
tttaaaaattgtgtattcaatatatttttagatgcatattcaatatcttaaaggattaaaatccagtaaattaaacattttatctggggttggtatcaca |
8937389 |
T |
|
| Q |
227 |
gaatttatgttaaggtttataaaaggtttatatcactaagctaaagtgaagttccaataaggtgtagtcaagctcatcatattattctacaaaaacatga |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8937390 |
taatttatgttaaggtttataaaaggtttatatcactaagctaa----------------ggtgtagtcaagctcatcatattattctacaaaaacatga |
8937473 |
T |
|
| Q |
327 |
agttgctctttcaaaaccttctttttcaatcacctcttgtcactcttttctctcttgctataatccttgtctctctacattatggtaatgctgtgaatct |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8937474 |
agttgctctttcaaaaccttctttttcaatcacctcttgtcactcttttctctcttgctataatccttgtctctctacattatggtaatgctgtgaatct |
8937573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 8937130 - 8937250
Alignment:
| Q |
7 |
tcgaagaatatcatttttaatagaagagatagaaatacaactttttccccaataattttaaacaaacataatggtatacttttcttaagaatatgtaaga |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8937130 |
tcgaagaaaatcatttttaatagaagagatagaaatacaactttttccccaataattttaaacaaacgtaatggtatacttttcttaagaatatgtaaga |
8937229 |
T |
|
| Q |
107 |
aataattttttgaagggatgt |
127 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
8937230 |
aatatttttttgaagggatgt |
8937250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 238 - 433
Target Start/End: Original strand, 8945571 - 8945768
Alignment:
| Q |
238 |
aaggtttataaaaggtttatatcactaagctaaagtgaagttccaataaggtgtagtca--agctcatcatattattctacaaaaacatgaagttgctct |
335 |
Q |
| |
|
||||| ||||||||| ||| | |||||| ||||| | |||||||||| | ||||||||| ||| | ||||||||||||||||||||||||| || || | |
|
|
| T |
8945571 |
aaggtatataaaaggcttacaccactaaactaaaataaagttccaatcaagtgtagtcacaagcccttcatattattctacaaaaacatgaaatttctat |
8945670 |
T |
|
| Q |
336 |
ttcaaaaccttctttttcaatcacctcttgtcactcttttctctcttgctataatccttgtctctctacattatggtaatgctgtgaatctaccaaac |
433 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | ||||||||||||| ||| |||| || |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8945671 |
ttcaaaatcttctttttcaatcacctcttgttaatcttttctctcttactacaatctttatctctctacattgtggtaatgctgtgaatctaccaaac |
8945768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University