View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15862_low_1 (Length: 755)
Name: NF15862_low_1
Description: NF15862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15862_low_1 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 10 - 739
Target Start/End: Complemental strand, 17832872 - 17832136
Alignment:
| Q |
10 |
gacatcatcacccaaaagaaagaaagacaacaccacaaaaagtatgaaaatagttttaatagaaactatgaaagattacgcagagattgatcaaaatcta |
109 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17832872 |
gacatcataactcaaaagaaagaaagacaacaccacaaaaagtatgaaaatagttttaatagaaactatgaaagattacgcagagattgatcaaaatcta |
17832773 |
T |
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| Q |
110 |
ggaacaaaatgcatgcctttatgctctgctgaagtattgtaccatcagaaaactttgctgcaaacagtttacatgctgaaaatacccaggaaaccacatc |
209 |
Q |
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| T |
17832772 |
ggaacaaaatgcatgcctttatgctctgctgcagtattgtaccatcagaaaactttgctgcaaacagtttacatgctgaaaatacccaggaaaccacatc |
17832673 |
T |
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| Q |
210 |
agatttccnnnnnnnnnnnnnn-cttcaaattatagacaattatttatacatgtccattaggaaacataatattataaatttatcaaagccatcaccaat |
308 |
Q |
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| T |
17832672 |
agatttccaaaaaaagagaaaaacttcaaattatagacaattatttatacatgtccattaggaagcataatattataaatttatcacagccatcaccaat |
17832573 |
T |
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| Q |
309 |
aatggaaatctatacattttattattaacttgaaaatgttgtaatgataaaatgggtttgctaatagcatacaaactaataacataatatttaacacttc |
408 |
Q |
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| T |
17832572 |
aatggaaatctatacattttattattaacttgaaaatgttgtaatgataaaatgggtttgctaatagcatacaaactaataacataatatttaacacttc |
17832473 |
T |
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| Q |
409 |
atatgcgtnnnnnnnnnn------cacttcatacggagctctaggagttaattagaagtaatgctgcagctagtaatcaaatctcattattcatttttaa |
502 |
Q |
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| T |
17832472 |
atatgcgtaaaaaaaaaaaaaaaacacttcatagggagctctaggagttaattagaagtaatcctgcagctagtaatcaaatctcattattcattttcaa |
17832373 |
T |
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| Q |
503 |
atatagcccaactaattgatcacagtaatttcaaactcttgaatgggcaatgcattttgacagaatccattctaaattaaaacggttaactaatgacaaa |
602 |
Q |
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| T |
17832372 |
atatagcccaactaattgatcacagtaatttcaaactcttgaatgggcaatgcattttgacagaatccattctaaattaaaacggttaactaatgacaaa |
17832273 |
T |
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| Q |
603 |
caacatccttcaactaacacatcaacaaatccagcacctttccacagttacagcttcgacatattcgtttgtacaaactcatcaaatacaacaaaatcat |
702 |
Q |
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| T |
17832272 |
caacatccttcaactaacacatcaacaaatccagcacctttccacagttacagcttcgacatattcgtttgtacagactcatcaaatacaacaaattcat |
17832173 |
T |
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| Q |
703 |
cactttgataagttaatgagggaatgacagagttaat |
739 |
Q |
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| T |
17832172 |
cactttgatcagttaatgagggaatgacagagttaat |
17832136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 642
Target Start/End: Original strand, 8692 - 8746
Alignment:
| Q |
588 |
ttaactaatgacaaacaacatccttcaactaacacatcaacaaatccagcacctt |
642 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||| |||||| |
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| T |
8692 |
ttaactaatgacaaacaacatccttccactaacggatcaacaaatccatcacctt |
8746 |
T |
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