View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15862_low_2 (Length: 496)

Name: NF15862_low_2
Description: NF15862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15862_low_2
NF15862_low_2
[»] chr2 (28 HSPs)
chr2 (7-481)||(16564272-16564746)
chr2 (107-229)||(10459260-10459384)
chr2 (109-229)||(24037576-24037698)
chr2 (110-219)||(31469068-31469179)
chr2 (111-219)||(38935365-38935475)
chr2 (163-229)||(944823-944889)
chr2 (163-217)||(41099030-41099084)
chr2 (155-215)||(43398844-43398904)
chr2 (113-204)||(7932743-7932836)
chr2 (106-217)||(41374533-41374646)
chr2 (119-219)||(16180437-16180539)
chr2 (158-229)||(43042213-43042284)
chr2 (163-229)||(4445856-4445922)
chr2 (111-205)||(2884254-2884350)
chr2 (163-206)||(1862670-1862713)
chr2 (167-229)||(14781966-14782028)
chr2 (107-181)||(17437166-17437242)
chr2 (155-216)||(35311190-35311250)
chr2 (157-201)||(19924350-19924394)
chr2 (163-219)||(25089917-25089973)
chr2 (155-199)||(40823551-40823595)
chr2 (167-229)||(10459258-10459320)
chr2 (163-216)||(11386361-11386414)
chr2 (111-204)||(41912094-41912190)
chr2 (181-230)||(42266029-42266078)
chr2 (106-134)||(22162236-22162264)
chr2 (175-215)||(24037648-24037688)
chr2 (129-226)||(35693934-35694033)
[»] chr5 (21 HSPs)
chr5 (110-229)||(39030560-39030681)
chr5 (111-229)||(33669919-33670039)
chr5 (107-229)||(34252711-34252835)
chr5 (111-216)||(5727714-5727820)
chr5 (107-229)||(9956490-9956614)
chr5 (109-193)||(33498357-33498443)
chr5 (114-216)||(12619626-12619724)
chr5 (155-220)||(20185314-20185379)
chr5 (155-215)||(9530957-9531017)
chr5 (162-229)||(34252709-34252776)
chr5 (118-196)||(504129-504207)
chr5 (163-216)||(968287-968340)
chr5 (163-216)||(30293428-30293481)
chr5 (155-215)||(2424444-2424504)
chr5 (119-196)||(42324905-42324984)
chr5 (157-216)||(17555949-17556008)
chr5 (155-229)||(37040147-37040220)
chr5 (109-196)||(38958057-38958146)
chr5 (159-216)||(17234538-17234594)
chr5 (172-229)||(33669988-33670045)
chr5 (119-192)||(19644427-19644502)
[»] chr1 (16 HSPs)
chr1 (110-229)||(19758262-19758384)
chr1 (110-229)||(3739806-3739927)
chr1 (155-219)||(37918916-37918980)
chr1 (108-238)||(30693330-30693462)
chr1 (107-229)||(47543593-47543717)
chr1 (108-201)||(5056314-5056409)
chr1 (119-217)||(3693991-3694091)
chr1 (155-217)||(26265783-26265845)
chr1 (155-219)||(5693576-5693640)
chr1 (163-219)||(31784787-31784843)
chr1 (107-215)||(3739808-3739918)
chr1 (127-219)||(6061462-6061556)
chr1 (171-214)||(50381198-50381241)
chr1 (178-215)||(42711885-42711922)
chr1 (155-219)||(27527707-27527771)
chr1 (155-215)||(29855102-29855162)
[»] chr6 (14 HSPs)
chr6 (155-229)||(30531222-30531296)
chr6 (119-219)||(31323820-31323922)
chr6 (111-215)||(35003757-35003863)
chr6 (112-215)||(1986203-1986308)
chr6 (120-197)||(9829898-9829977)
chr6 (167-218)||(30531181-30531232)
chr6 (163-229)||(9675754-9675820)
chr6 (163-217)||(14222845-14222899)
chr6 (155-215)||(1937689-1937749)
chr6 (156-204)||(24547189-24547237)
chr6 (155-216)||(13320854-13320915)
chr6 (163-216)||(33822340-33822393)
chr6 (163-219)||(2282450-2282506)
chr6 (107-216)||(31522613-31522723)
[»] chr8 (8 HSPs)
chr8 (111-217)||(35901039-35901147)
chr8 (118-219)||(9548052-9548154)
chr8 (156-217)||(29797944-29798005)
chr8 (159-219)||(11114284-11114344)
chr8 (174-219)||(32729727-32729772)
chr8 (163-215)||(37627916-37627968)
chr8 (155-196)||(13210008-13210049)
chr8 (163-215)||(33557781-33557833)
[»] chr7 (15 HSPs)
chr7 (114-229)||(6803308-6803425)
chr7 (111-219)||(18731992-18732101)
chr7 (159-217)||(3769757-3769815)
chr7 (123-229)||(16866393-16866501)
chr7 (117-215)||(23971191-23971290)
chr7 (155-216)||(32652411-32652472)
chr7 (155-216)||(44816511-44816572)
chr7 (111-204)||(47967911-47968006)
chr7 (110-216)||(3719874-3719982)
chr7 (159-215)||(27147603-27147659)
chr7 (157-216)||(14773517-14773576)
chr7 (157-216)||(15223969-15224028)
chr7 (107-140)||(1554918-1554951)
chr7 (121-203)||(4259324-4259408)
chr7 (163-191)||(5026192-5026220)
[»] chr4 (12 HSPs)
chr4 (107-216)||(54235227-54235338)
chr4 (109-229)||(12276816-12276938)
chr4 (111-219)||(30848592-30848704)
chr4 (163-219)||(4423201-4423257)
chr4 (155-215)||(5496857-5496917)
chr4 (164-219)||(51714236-51714291)
chr4 (172-229)||(2734171-2734228)
chr4 (119-215)||(24980631-24980729)
chr4 (163-220)||(2871550-2871607)
chr4 (159-216)||(13777136-13777193)
chr4 (164-217)||(37783907-37783960)
chr4 (107-135)||(38940748-38940776)
[»] scaffold0067 (1 HSPs)
scaffold0067 (111-219)||(35938-36048)
[»] chr3 (15 HSPs)
chr3 (119-219)||(32221472-32221574)
chr3 (119-219)||(26914452-26914553)
chr3 (117-225)||(31280159-31280269)
chr3 (155-217)||(47783122-47783184)
chr3 (163-215)||(26104270-26104322)
chr3 (157-223)||(37330973-37331039)
chr3 (163-216)||(11256577-11256630)
chr3 (167-216)||(32221526-32221575)
chr3 (155-219)||(15282641-15282705)
chr3 (155-215)||(29637439-29637499)
chr3 (163-215)||(46733069-46733121)
chr3 (111-146)||(46829047-46829082)
chr3 (107-146)||(46829119-46829158)
chr3 (163-217)||(18364220-18364273)
chr3 (127-217)||(5307341-5307433)
[»] scaffold0097 (1 HSPs)
scaffold0097 (155-215)||(37955-38015)
[»] scaffold0034 (1 HSPs)
scaffold0034 (163-215)||(94998-95050)
[»] scaffold0027 (2 HSPs)
scaffold0027 (155-215)||(13218-13278)
scaffold0027 (172-217)||(13178-13223)
[»] scaffold0072 (1 HSPs)
scaffold0072 (118-215)||(20368-20467)
[»] scaffold0009 (1 HSPs)
scaffold0009 (163-217)||(51225-51279)


Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 7 - 481
Target Start/End: Original strand, 16564272 - 16564746
Alignment:
Q  7 agaaaagaaagaaaataataagctttgaattaacatgggaaaaagccaaagggaatgaagctattgttcaccttcactaaattttttgctaatgtctatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16564272 agaaaagaaagaaaataataagctttgaattaacatgggaaaaagccaaagggaatgaagctattgttcaccttcactaaactttttgctaatgtctatt 16564371  T
Q  107 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgc 206  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  16564372 tccttccgtcctaaaatataagcaaaaattggtctacaaacgttagtgtttggttcaaaatttgtaccaaatacatcaacttatgttgactcatttttac 16564471  T
Q  207 ttacattttgggagggaaggagtgtattgcaagaaacaaacaagttactttgaataaacgcgtgccctatgaagctgacacatactaacccttcccctct 306  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16564472 ttacattttgggacggaaggagtgtattgcaagaaacaaacaagttactttgaataaacgcgtgccctatgaagctgacacatactaacccttcccctct 16564571  T
Q  307 ctttctttctttcctcatggctctccttttcaagttctttcaacatggattctctttatagtgcaaaaaccatcacttgtctcaagagataggactagat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16564572 ctttctttctttcctcatggctctccttttcaagttctttcaacatggattctctttatagtgcaaaaaccatcacttgtctcaagagataggactagat 16564671  T
Q  407 tctactttcacactttttgcaactatcgtcatctttaaaatgtacatttttaaagggattatcgatcgacaatat 481  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16564672 tctactttcacactttttgcaactatcgtcatctttaaaatgcacatttttaaagggattatcgatcgacaatat 16564746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 10459260 - 10459384
Alignment:
Q  107 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 204  Q
    ||||||| ||| |||||||||||||||||||||| |||||  ||| |||  |||||| |||||||||| || || |||||||||||||||||  || |||    
T  10459260 tccctccttcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatcttt 10459359  T
Q  205 gcttacattttgggagggaaggagt 229  Q
    ||||||||||||||| ||| |||||    
T  10459360 gcttacattttgggacggagggagt 10459384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 24037698 - 24037576
Alignment:
Q  109 cctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgc 206  Q
    ||||||||||||||  ||||||||||| |||| ||| |  ||  |||  || ||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  24037698 cctccgtcctaaaaagtaagcaaaaatgggtcgacataagttgatgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgc 24037599  T
Q  207 ttacattttgggagggaaggagt 229  Q
    ||||||||| ||| ||| |||||    
T  24037598 ttacattttaggacggatggagt 24037576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 31469068 - 31469179
Alignment:
Q  110 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgct 207  Q
    |||||||| |||||||||||||||||||||| |||||  ||| |||  |||||| |||||||||| ||||||||| |||||  ||||||  |||||||||    
T  31469068 ctccgtcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgct 31469167  T
Q  208 tacattttggga 219  Q
    || |||||||||    
T  31469168 tatattttggga 31469179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 38935475 - 38935365
Alignment:
Q  111 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 208  Q
    ||||||| ||||||||| ||||||||  || |||||  ||| |||  || ||| ||||| |||| |||||||||||||||||||||||||||||||||||    
T  38935475 tccgtccaaaaatataaacaaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgctt 38935376  T
Q  209 acattttggga 219  Q
    | |||||||||    
T  38935375 atattttggga 38935365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 944823 - 944889
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 229  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||| |||||    
T  944823 aaaatttgtaccaaatacatcaacttatgttgactaatttttacttacattttgagacggagggagt 944889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 41099030 - 41099084
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 217  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  41099030 aaaatttgtaccaaatacattaacttatgttgacccatttttgcttacattttgg 41099084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 43398904 - 43398844
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  43398904 tttggttcaaaatttgtaccaaatacatcaacttatattgacccatttttacttacatttt 43398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 7932743 - 7932836
Alignment:
Q  113 cgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 204  Q
    |||| ||||||||||||||||||| ||| |||||  |||  || ||||||| ||||||| || || ||||||||||||||||||||||||||||    
T  7932743 cgtcttaaaatataagcaaaaattagtcaacaaaagttaacgtatttggttcaaaatttatatcagatacatcaacttatgttgactcattttt 7932836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 41374646 - 41374533
Alignment:
Q  106 ttccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttt 203  Q
    |||||||||||  |||||||||| ||||||| ||| || ||  ||| |||  ||| || ||| ||| |||||||||||||||||| |||| |||||||||    
T  41374646 ttccctccgtctcaaaatataagtaaaaattagtcaacgaaagttaatgtatttgattcaaagtttataccaaatacatcaacttgtgttcactcatttt 41374547  T
Q  204 tgcttacattttgg 217  Q
    ||||||||||||||    
T  41374546 tgcttacattttgg 41374533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 16180539 - 16180437
Alignment:
Q  119 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    |||||||||| |||| |||||| |||||  ||| |||  |||||| ||||||| ||   |||||||||| ||||||||||| ||||||||||||||||||    
T  16180539 aaaatataagtaaaatttggtcaacaaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacattttg 16180440  T
Q  217 gga 219  Q
    |||    
T  16180439 gga 16180437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 43042213 - 43042284
Alignment:
Q  158 ggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 229  Q
    |||| ||||||| || || |||||||||||| |||| ||||||||||||||||||||||||| ||| |||||    
T  43042213 ggttcaaaatttatatcagatacatcaacttttgtttactcatttttgcttacattttgggatggagggagt 43042284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 4445922 - 4445856
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 229  Q
    ||||||||||||||||||||||| |||| || ||| ||||||||||| ||||||||| |||| ||||    
T  4445922 aaaatttgtaccaaatacatcaatttatattaacttatttttgcttatattttgggatggaaagagt 4445856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 2884254 - 2884350
Alignment:
Q  111 tccgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttg 205  Q
    |||||||||||||||||| ||||||| ||| ||||| ||||  || ||||||| ||||||| || |||||| || || |||| ||||||||||||||    
T  2884254 tccgtcctaaaatataagtaaaaatttgtcaacaaaaattaatgtatttggttcaaaatttatatcaaatatattaaattatattgactcatttttg 2884350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 1862713 - 1862670
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgc 206  Q
    |||||||||  |||||||||||||||||||||||||||||||||    
T  1862713 aaaatttgtgtcaaatacatcaacttatgttgactcatttttgc 1862670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 14781966 - 14782028
Alignment:
Q  167 tttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 229  Q
    |||| ||||||||||  |||||||||||||||| |||||||||| |||||||| ||| |||||    
T  14781966 tttgaaccaaatacactaacttatgttgactcaattttgcttacgttttgggacggatggagt 14782028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 17437242 - 17437166
Alignment:
Q  107 tccctccgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaataca 181  Q
    ||||||||||| ||||||||| |||||||| ||| ||||| ||||  || ||| ||| |||||||||||||||||||    
T  17437242 tccctccgtcccaaaatataaacaaaaatttgtcaacaaaaattaatgtatttagttcaaaatttgtaccaaataca 17437166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 35311250 - 35311190
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    ||||||| ||||||||||| | ||| || ||||||||||||| |||||||||||||||||||    
T  35311250 tttggttcaaaatttgtacaagatatat-aacttatgttgacccatttttgcttacattttg 35311190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 19924350 - 19924394
Alignment:
Q  157 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatt 201  Q
    ||||| ||||||||||||||||||||||||||| |||||| ||||    
T  19924350 tggttcaaaatttgtaccaaatacatcaacttacgttgacccatt 19924394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 25089973 - 25089917
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 219  Q
    |||||||||| |||||||| ||||||||||| |  ||||||| ||||||||||||||    
T  25089973 aaaatttgtatcaaatacaacaacttatgttaatccattttttcttacattttggga 25089917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 40823595 - 40823551
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactca 199  Q
    ||||||||||||||| || |||||||||||| |||||||||||||    
T  40823595 tttggtttaaaatttatatcaaatacatcaaattatgttgactca 40823551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 10459320 - 10459258
Alignment:
Q  167 tttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 229  Q
    |||| ||||||||||| ||||| |||||||  ||||||||||| ||||||||| ||| |||||    
T  10459320 tttgaaccaaatacattaacttttgttgaccaatttttgcttatattttgggaaggagggagt 10459258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 11386361 - 11386414
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    |||||||||| ||||||||||||||||||||||   | ||||||||| ||||||    
T  11386361 aaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttg 11386414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 41912190 - 41912094
Alignment:
Q  111 tccgtcctaaaatataagcaaaaa-ttggtctacaaacattagtgttt--ggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 204  Q
    ||||| |||||||||||||||||| ||| || ||||| |||| ||| |  |||| |||||||||||||  || || |||||||||||||| ||||||    
T  41912190 tccgttctaaaatataagcaaaaaattgttcaacaaaaattaatgtatctggttcaaaatttgtaccagctagattaacttatgttgacttattttt 41912094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 42266029 - 42266078
Alignment:
Q  181 atcaacttatgttgactcatttttgcttacattttgggagggaaggagtg 230  Q
    ||||| ||||| |||  |||||||||||||||||||||| ||||||||||    
T  42266029 atcaatttatggtgatccatttttgcttacattttgggatggaaggagtg 42266078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 22162236 - 22162264
Alignment:
Q  106 ttccctccgtcctaaaatataagcaaaaa 134  Q
    |||||||||||||||||||||||||||||    
T  22162236 ttccctccgtcctaaaatataagcaaaaa 22162264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 24037648 - 24037688
Alignment:
Q  175 aaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    |||||||||||||||||| ||| ||||||||||||| ||||    
T  24037648 aaatacatcaacttatgtcgacccatttttgcttacttttt 24037688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 35693934 - 35694033
Alignment:
Q  129 caaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaagg 226  Q
    |||||||||||| | ||| |||| |||  ||||||||||||| ||| ||||||||| ||  |||| ||| ||||||| ||||| |||||| || ||||||    
T  35693934 caaaaattggtcaataaaaattaatgtatttggtttaaaattagtatcaaatacattaatctatgatgattcattttcgcttatattttgagacggaagg 35694033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 39030560 - 39030681
Alignment:
Q  110 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgct 207  Q
    |||||| |||||||||||||||||||||||| |||||  ||| |||  |||||| |||||||||||||||||||| ||||| |||||||| |||||||||    
T  39030560 ctccgttctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgct 39030659  T
Q  208 tacattttgggagggaaggagt 229  Q
    || ||||||||| ||| |||||    
T  39030660 tatattttgggatggagggagt 39030681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 33670039 - 33669919
Alignment:
Q  111 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 208  Q
    ||||||| ||||| |||||||||||||||| | |||  ||| |||  |||||||||||||||||||| |||||  ||||||||||||| |||||||||||    
T  33670039 tccgtcccaaaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgctt 33669940  T
Q  209 acattttgggagggaaggagt 229  Q
    ||||||||||| ||| |||||    
T  33669939 acattttgggatggatggagt 33669919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 34252711 - 34252835
Alignment:
Q  107 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 204  Q
    ||||||||||| ||||| |||||||||||||||| |||||  ||| |||  |||||| ||||||| | ||| || |||||||||||||| || |||||||    
T  34252711 tccctccgtcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttatgccacattcatcaacttatgttaacccattttt 34252810  T
Q  205 gcttacattttgggagggaaggagt 229  Q
    ||||||||||||||| ||| |||||    
T  34252811 gcttacattttgggacggagggagt 34252835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 5727714 - 5727820
Alignment:
Q  111 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt-ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctta 209  Q
    ||||||| ||||| |||| ||||||||||| | ||| |||| | | |||||||||||||||||||| ||||||||||||||  ||||  |||||| ||||    
T  5727714 tccgtcccaaaatgtaagtaaaaattggtcaataaaaattaatatattggtttaaaatttgtaccagatacatcaacttattgtgacctatttttactta 5727813  T
Q  210 cattttg 216  Q
    |||||||    
T  5727814 cattttg 5727820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 229
Target Start/End: Complemental strand, 9956614 - 9956490
Alignment:
Q  107 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 204  Q
    ||||||||||| ||||| |||| ||||||||||  |||||  ||| |||  ||| || ||||||| || || |||||||||| ||||||||| |||||||    
T  9956614 tccctccgtcccaaaatgtaagtaaaaattggttaacaaaagttaatgtatttgattcaaaatttataacagatacatcaacatatgttgacccattttt 9956515  T
Q  205 gcttacattttgggagggaaggagt 229  Q
     |||||||||||||| ||| |||||    
T  9956514 acttacattttgggatggatggagt 9956490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 33498357 - 33498443
Alignment:
Q  109 cctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgtt 193  Q
    ||||||||||||||||||||||||| |||| | ||||| || | | |  |||||| ||||||||||| |||||||||||||||||||    
T  33498357 cctccgtcctaaaatataagcaaaagttggccaacaaaaatcaatatatttggttcaaaatttgtacaaaatacatcaacttatgtt 33498443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 12619626 - 12619724
Alignment:
Q  114 gtcctaaaatataagcaaaaattggtctacaaacattagtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatt 213  Q
    |||||||||||||||||||| ||| || ||||| ||     |||| || ||||||| || ||||||||||||||||||||||  |||||||||||| |||    
T  12619626 gtcctaaaatataagcaaaagttgatcaacaaatata----tttgattcaaaatttatatcaaatacatcaacttatgttgatccatttttgcttatatt 12619721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 20185379 - 20185314
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggag 220  Q
    ||||||| ||||||||||| ||||||||| |||||| || ||||||||||  ||||||||||||||    
T  20185379 tttggttcaaaatttgtacaaaatacatcgacttatattaactcatttttatttacattttgggag 20185314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 9530957 - 9531017
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    ||||||| ||||||| || |||||||| ||| |||| ||||||||||||||||||||||||    
T  9530957 tttggttcaaaatttatatcaaatacaccaatttatattgactcatttttgcttacatttt 9531017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 34252776 - 34252709
Alignment:
Q  162 taaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 229  Q
    |||| |||| ||||||||||| ||||| |||||||  ||||||||||||||||||||| ||| |||||    
T  34252776 taaattttgaaccaaatacattaacttttgttgaccaatttttgcttacattttgggacggagggagt 34252709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 504129 - 504207
Alignment:
Q  118 taaaatataagcaaaaattggtctacaaacattagtgtttggtttaaaatttgtaccaaatacatcaacttatgttgac 196  Q
    |||||||||||||||||| |||| ||||| |||| | ||||||| | |||||||| ||||||||| || || |||||||    
T  504129 taaaatataagcaaaaatcggtcaacaaaaattaatatttggttcagaatttgtatcaaatacattaatttttgttgac 504207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 968340 - 968287
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    |||||||||||||||||||||||||||  ||||| || |||| |||||||||||    
T  968340 aaaatttgtaccaaatacatcaacttaaattgacccacttttacttacattttg 968287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 30293428 - 30293481
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    ||||||| || ||||||||||||| ||||||||||||||||| |||| ||||||    
T  30293428 aaaatttatatcaaatacatcaacatatgttgactcatttttacttatattttg 30293481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 2424504 - 2424444
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    ||||||| ||||||||||||| |||||||| |||||||| ||  ||||||||||| |||||    
T  2424504 tttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgcttatatttt 2424444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 42324984 - 42324905
Alignment:
Q  119 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgac 196  Q
    |||||||||| ||||||||||| |||||  ||| |||  ||| |||||||||| ||||||||||||||| |||| |||||    
T  42324984 aaaatataagtaaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaatacatcaatttatattgac 42324905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 17556008 - 17555949
Alignment:
Q  157 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    ||||| ||||||| || |||||| ||||||||| |||||||||||||| |||| ||||||    
T  17556008 tggttcaaaatttatatcaaatatatcaacttacgttgactcatttttacttatattttg 17555949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 37040147 - 37040220
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 229  Q
    |||| |||||||||||||||  ||||||||||||||||| || ||||||| |||| ||||| ||| ||| |||||    
T  37040147 tttgatttaaaatttgtacctcatacatcaacttatgtt-acccatttttacttatattttaggatggagggagt 37040220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 38958057 - 38958146
Alignment:
Q  109 cctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgac 196  Q
    ||||||| | |||||||||| |||||||| |  |||||  ||| |||  |||||| ||| ||||||||||||||||||||| ||||||||    
T  38958057 cctccgttccaaaatataagtaaaaattgattaacaaaagttaatgtatttggttcaaattttgtaccaaatacatcaactcatgttgac 38958146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 17234594 - 17234538
Alignment:
Q  159 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    |||||||||||||| ||||||||| || |||| || ||||||||||||||| ||||||    
T  17234594 gtttaaaatttgtagcaaatacattaatttatatt-actcatttttgcttatattttg 17234538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 33669988 - 33670045
Alignment:
Q  172 accaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 229  Q
    ||||||||||| ||||| | |||||  ||||||||||||||||||||| ||| |||||    
T  33669988 accaaatacattaactttttttgaccaatttttgcttacattttgggacggatggagt 33670045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 19644502 - 19644427
Alignment:
Q  119 aaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgt 192  Q
    |||||||||| || ||||| || ||||| ||||  || ||||||| ||||||| ||| ||||||||||||||||||    
T  19644502 aaaatataagtaagaattgatcaacaaaaattaacgtatttggttcaaaatttatactaaatacatcaacttatgt 19644427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 19758384 - 19758262
Alignment:
Q  110 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttg-actcatttttgc 206  Q
    ||||||| ||||||||||| ||||||||||| |||||  ||| |||  || ||||| ||||||||||||||||||||||||| |||  ||||||||||||    
T  19758384 ctccgtcataaaatataagtaaaaattggtcaacaaaagttaatgtatttagtttataatttgtaccaaatacatcaacttacgttatactcatttttgc 19758285  T
Q  207 ttacattttgggagggaaggagt 229  Q
    ||||||||||||| |||||||||    
T  19758284 ttacattttgggacggaaggagt 19758262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 3739927 - 3739806
Alignment:
Q  110 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgct 207  Q
    ||||||||||||||||||||||||||||||| |||||  ||| |||  |||||| |||||||||||||||||||| |||||  ||||||  |||||||||    
T  3739927 ctccgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgct 3739828  T
Q  208 tacattttgggagggaaggagt 229  Q
    || ||||||||| ||| |||||    
T  3739827 tatattttgggacggagggagt 3739806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 37918980 - 37918916
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 219  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||    
T  37918980 tttggtttaaaatttatatcaaatacatcaacttatgttgattcatttttgcttacattttggga 37918916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 30693330 - 30693462
Alignment:
Q  108 ccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttg 205  Q
    |||||||||| |||||||||  |||||||| || ||||| |||| |||  ||| || ||||||||||||||||||||||  ||||||||| ||||||||     
T  30693330 ccctccgtccgaaaatataaataaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgttgattcattttta 30693429  T
Q  206 cttacattttgggagggaaggagtgtattgcaa 238  Q
    |||||||||||  | ||||||||| || |||||    
T  30693430 cttacattttgaaacggaaggagtataatgcaa 30693462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 47543593 - 47543717
Alignment:
Q  107 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtg--tttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 204  Q
    |||||| ||| ||||||||||  ||||||||||| ||||| |||| ||  ||||||| ||||||||||||||||||||||||||| | |   |||||||     
T  47543593 tccctctgtcttaaaatataataaaaaattggtcaacaaaaattaatgaatttggttcaaaatttgtaccaaatacatcaacttacgctatttcattttg 47543692  T
Q  205 gcttacattttgggagggaaggagt 229  Q
    ||||||||||||||| ||| |||||    
T  47543693 gcttacattttgggacggagggagt 47543717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 5056409 - 5056314
Alignment:
Q  108 ccctccgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatt 201  Q
    ||||| |||| ||||||||| |||||||||||| | ||| ||||  || |||| || |||||||||| ||||||||||||||||||||||||||||    
T  5056409 ccctctgtcccaaaatataaacaaaaattggtcaataaaaattaacgtatttgattcaaaatttgtatcaaatacatcaacttatgttgactcatt 5056314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 3694091 - 3693991
Alignment:
Q  119 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    |||||||||| | ||||||||| ||||| |||| |||  ||| || ||||||||||  ||||||||||| |||||||||||||||| | |||||||||||    
T  3694091 aaaatataagtagaaattggtcaacaaaaattaatgtatttgattcaaaatttgtattaaatacatcaatttatgttgactcatttctacttacattttg 3693992  T
Q  217 g 217  Q
    |    
T  3693991 g 3693991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 26265845 - 26265783
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 217  Q
    ||||||| ||||||| ||| ||||||||||||||||||| ||  |||||||||||||||||||    
T  26265845 tttggttcaaaatttatactaaatacatcaacttatgttaacatatttttgcttacattttgg 26265783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 5693640 - 5693576
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 219  Q
    ||||||||||||||||||| ||| ||||||| |||||||||   |||||||||||||||| ||||    
T  5693640 tttggtttaaaatttgtactaaaaacatcaatttatgttgatatatttttgcttacatttcggga 5693576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 31784787 - 31784843
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 219  Q
    ||||||||||  | ||||||||||||||||||||  |||||||||||||||||||||    
T  31784787 aaaatttgtattagatacatcaacttatgttgacaaatttttgcttacattttggga 31784843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 3739808 - 3739918
Alignment:
Q  107 tccctccgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 204  Q
    ||||||||||| |||||||||||||||||||||| || ||  |||  || ||||||  ||| |||  ||||||||||| ||||| |||||||  ||||||    
T  3739808 tccctccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaattttt 3739907  T
Q  205 gcttacatttt 215  Q
    ||||| |||||    
T  3739908 gcttatatttt 3739918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 6061556 - 6061462
Alignment:
Q  127 agcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 219  Q
    |||||| ||||||| ||||| |||| |||  ||| |||||||||||||| | |||||| |||||||||||  ||||| ||||| |||||||||||    
T  6061556 agcaaatattggtcaacaaaaattaatgtatttgttttaaaatttgtactagatacattaacttatgttggttcattcttgctaacattttggga 6061462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 50381198 - 50381241
Alignment:
Q  171 taccaaatacatcaacttatgttgactcatttttgcttacattt 214  Q
    ||||||||||||||||||||||||| | |||||| |||||||||    
T  50381198 taccaaatacatcaacttatgttgatttatttttccttacattt 50381241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 42711885 - 42711922
Alignment:
Q  178 tacatcaacttatgttgactcatttttgcttacatttt 215  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  42711885 tacatcaacttatgatgacttatttttgcttacatttt 42711922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 27527771 - 27527707
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 219  Q
    ||||||| ||||||| ||||| |||||||||||||| || || |||||||  ||| |||||||||    
T  27527771 tttggttcaaaatttataccagatacatcaacttatatttacccatttttatttatattttggga 27527707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 29855102 - 29855162
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    ||||||| ||||||||||| |||||||| ||||| ||||||   ||||||||||| |||||    
T  29855102 tttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgcttatatttt 29855162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 30531222 - 30531296
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 229  Q
    ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||    
T  30531222 tttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttttgcttacattttgggacggagggagt 30531296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 31323820 - 31323922
Alignment:
Q  119 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    ||||| |||||||||||||||| |||||  ||| |||  || ||| ||||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  31323820 aaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacattttg 31323919  T
Q  217 gga 219  Q
    |||    
T  31323920 gga 31323922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 35003757 - 35003863
Alignment:
Q  111 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 208  Q
    |||||||||||||||||| ||||||||||  | ||| |||| |||  ||| || ||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  35003757 tccgtcctaaaatataagtaaaaattggttaataaaaattaatgtatttgattcaaaatttgtacaaaatatatcaacttatgttgattcatttttgctt 35003856  T
Q  209 acatttt 215  Q
    |||||||    
T  35003857 acatttt 35003863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 1986203 - 1986308
Alignment:
Q  112 ccgtcctaaaatataagcaaaaattggtctacaaacattagtg--tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctta 209  Q
    ||||||||||||||||| |||| |||||| | ||| |||| ||  ||| ||||||||||| ||||||||| || |||||||||||||| ||||||  |||    
T  1986203 ccgtcctaaaatataagtaaaagttggtcaataaaaattaatgcatttagtttaaaatttataccaaatatattaacttatgttgactgatttttattta 1986302  T
Q  210 catttt 215  Q
    ||||||    
T  1986303 catttt 1986308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 9829898 - 9829977
Alignment:
Q  120 aaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgact 197  Q
    ||||||||| ||||||| ||| ||||| |||| |||  || ||||||||||||||||||||||||||| |||||||||||    
T  9829898 aaatataagtaaaaattagtcaacaaaaattaatgtattttgtttaaaatttgtaccaaatacatcaatttatgttgact 9829977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 30531232 - 30531181
Alignment:
Q  167 tttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggg 218  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||||||    
T  30531232 tttgaaccaaatacatcaacttatgttgacccgtttttgcttacattttggg 30531181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 9675820 - 9675754
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 229  Q
    ||||||||||||| || |||||||||||||||||  |||||||||||||||||| || ||| |||||    
T  9675820 aaaatttgtaccagatgcatcaacttatgttgaccaatttttgcttacattttgagacggagggagt 9675754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 14222845 - 14222899
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 217  Q
    |||||||  |||| |||||||||||||||||||| ||||||||||||||||||||    
T  14222845 aaaatttacaccatatacatcaacttatgttgacccatttttgcttacattttgg 14222899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 1937689 - 1937749
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    |||| |||||||||| ||| |||| ||||||||||| || | |||||||||||||||||||    
T  1937689 tttgatttaaaatttatactaaattcatcaacttatattaattcatttttgcttacatttt 1937749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 24547237 - 24547189
Alignment:
Q  156 ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 204  Q
    |||||||||||||| || |||||||||||| ||||||||||| ||||||    
T  24547237 ttggtttaaaatttatatcaaatacatcaatttatgttgacttattttt 24547189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 13320854 - 13320915
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    |||||| ||||||||  |||| ||||||||||||  ||||||||||| ||||||| ||||||    
T  13320854 tttggtgtaaaatttagaccagatacatcaactttcgttgactcattgttgcttatattttg 13320915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 33822340 - 33822393
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    |||||||||| ||||||||||||||||| || |  ||||||| |||||||||||    
T  33822340 aaaatttgtatcaaatacatcaacttatattaatccatttttacttacattttg 33822393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 2282450 - 2282506
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 219  Q
    |||| ||||| |||||||||||| ||||||| ||| ||||||||||| || ||||||    
T  2282450 aaaaattgtatcaaatacatcaatttatgttaactaatttttgcttatatattggga 2282506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 31522723 - 31522613
Alignment:
Q  107 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtg--tttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 204  Q
    ||||| ||||| ||||| ||||||||| |||||| |||||  ||| ||  |||| || ||||||||||||| |||||||   |||| || ||| ||||||    
T  31522723 tcccttcgtcccaaaatgtaagcaaaa-ttggtcaacaaaagttaatgcatttgattcaaaatttgtaccagatacatcgttttatattaacttattttt 31522625  T
Q  205 gcttacattttg 216  Q
    ||||||||||||    
T  31522624 gcttacattttg 31522613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 35901147 - 35901039
Alignment:
Q  111 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgttt--ggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 208  Q
    ||||||||||||||||||||||||| |||| |||||  ||| ||| |  || | ||||||||||| || |||||||||||||||||||||||||||||||    
T  35901147 tccgtcctaaaatataagcaaaaataggtcaacaaaagttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgactcatttttgctt 35901048  T
Q  209 acattttgg 217  Q
    | |||||||    
T  35901047 atattttgg 35901039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 9548154 - 9548052
Alignment:
Q  118 taaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    |||||||||| ||||||||| || ||||| |||| | |  |||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  9548154 taaaatataaacaaaaattgttcaacaaaaattattatatttggttcaaaatttgtactaaatacatcaacttatgttgactcattttt-cttgcatttt 9548056  T
Q  216 ggga 219  Q
    ||||    
T  9548055 ggga 9548052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 29798005 - 29797944
Alignment:
Q  156 ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 217  Q
    |||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||||||    
T  29798005 ttggttcaaaatttgtaccaaatacataaatttatgttaactcatttttgcttacattttgg 29797944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 11114284 - 11114344
Alignment:
Q  159 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 219  Q
    ||||||||||| |||||||||||||||||||||||||   |||||| |||| |||||||||    
T  11114284 gtttaaaatttataccaaatacatcaacttatgttgatcaatttttacttatattttggga 11114344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 32729772 - 32729727
Alignment:
Q  174 caaatacatcaacttatgttgactcatttttgcttacattttggga 219  Q
    |||||||||||| || |||||| |||||||||||||||||||||||    
T  32729772 caaatacatcaatttttgttgattcatttttgcttacattttggga 32729727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 37627968 - 37627916
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    |||||||||| ||||||||||||||||| || ||| |||||| ||||||||||    
T  37627968 aaaatttgtatcaaatacatcaacttatattaacttatttttacttacatttt 37627916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 13210008 - 13210049
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgac 196  Q
    ||||||| |||||||||| || ||||||||||||||||||||    
T  13210008 tttggttcaaaatttgtatcagatacatcaacttatgttgac 13210049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 33557833 - 33557781
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactca-tttttgcttacatttt 215  Q
    |||||||||| ||||||||| |||||||||||| ||| ||||||||||||||||    
T  33557833 aaaatttgtatcaaatacataaacttatgttga-tcattttttgcttacatttt 33557781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 6803308 - 6803425
Alignment:
Q  114 gtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttaca 211  Q
    |||| ||||||||||||||| |||||| |||||  ||| |||  || ||||||||||||||||||||||  |||||| ||||||||| ||||||||| ||    
T  6803308 gtcccaaaatataagcaaaatttggtcaacaaaagttaatgtatttagtttaaaatttgtaccaaatacgccaacttgtgttgactcgtttttgcttgca 6803407  T
Q  212 ttttgggagggaaggagt 229  Q
    |||| ||| |||||||||    
T  6803408 ttttaggacggaaggagt 6803425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 18732101 - 18731992
Alignment:
Q  111 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 208  Q
    ||||||||||||| |||| ||||||||||| | |||  ||| |||  |||||| ||||||| ||||| ||||||||| |||||||||  |||||||||||    
T  18732101 tccgtcctaaaatgtaag-aaaaattggtcaataaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccatttttgctt 18732003  T
Q  209 acattttggga 219  Q
    | |||||||||    
T  18732002 atattttggga 18731992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 3769815 - 3769757
Alignment:
Q  159 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 217  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||| ||| ||||||||    
T  3769815 gtttaaaatttgtattaaatacatcaacttgtgttgactcatttttacttgcattttgg 3769757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 16866501 - 16866393
Alignment:
Q  123 tataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggag 220  Q
    |||||||||||||||||| |||||  ||| |||  |||||| |||||||||||| ||||||| ||||| | ||||   ||||||||||| |||||||||     
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttgggat 16866402  T
Q  221 ggaaggagt 229  Q
    ||| |||||    
T  16866401 ggagggagt 16866393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 23971290 - 23971191
Alignment:
Q  117 ctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattt 214  Q
    |||||||||||| ||||||||||| ||||| || | | |  || ||| |||||||||||||||||||||||||||| |||| | ||||||||||| ||||    
T  23971290 ctaaaatataag-aaaaattggtcaacaaaaataaatatatttagttcaaaatttgtaccaaatacatcaacttatattgatttatttttgcttatattt 23971192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 32652472 - 32652411
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    ||||||| ||| ||||||||||||||| ||| ||||||||||| |||||| |||||||||||    
T  32652472 tttggttcaaagtttgtaccaaatacaccaatttatgttgacttatttttacttacattttg 32652411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 44816511 - 44816572
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    ||||||| ||||||||||||||||||||||  |||| || | ||||||||||||||||||||    
T  44816511 tttggttcaaaatttgtaccaaatacatcagtttatattaattcatttttgcttacattttg 44816572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 47967911 - 47968006
Alignment:
Q  111 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 204  Q
    ||||||| ||||||||| ||||| | |||| ||||| |||  |||  || ||||||||||||||| |||||||| |||||||||||| ||||||||    
T  47967911 tccgtcccaaaatataaacaaaattcggtcaacaaaaatttatgtatttagtttaaaatttgtactaaatacattaacttatgttgattcattttt 47968006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 3719874 - 3719982
Alignment:
Q  110 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgct 207  Q
    |||| ||| |||||||| | ||||||||||| || ||  |||||||  |||||| ||| ||| ||| | |||||||||||||||||||   |||||||||    
T  3719874 ctccatcccaaaatatatgtaaaaattggtcaactaaagttagtgtatttggttcaaattttttacgagatacatcaacttatgttgatcaatttttgct 3719973  T
Q  208 tacattttg 216  Q
    |||||||||    
T  3719974 tacattttg 3719982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 27147659 - 27147603
Alignment:
Q  159 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    |||||||||||||| ||||||||| ||||| |||||||| |||||| |||| |||||    
T  27147659 gtttaaaatttgtatcaaatacattaacttttgttgactaatttttacttatatttt 27147603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 14773517 - 14773576
Alignment:
Q  157 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    ||||| ||||||| || || ||||||||||||| |||||||||||||| |||| ||||||    
T  14773517 tggttcaaaatttatatcagatacatcaacttacgttgactcatttttacttatattttg 14773576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 15223969 - 15224028
Alignment:
Q  157 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    ||||| ||||||| || || ||||||||||||| |||||||||||||| |||| ||||||    
T  15223969 tggttcaaaatttatatcagatacatcaacttacgttgactcatttttacttatattttg 15224028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 140
Target Start/End: Complemental strand, 1554951 - 1554918
Alignment:
Q  107 tccctccgtcctaaaatataagcaaaaattggtc 140  Q
    ||||||||||||||||||||| ||||||||||||    
T  1554951 tccctccgtcctaaaatataaacaaaaattggtc 1554918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 4259408 - 4259324
Alignment:
Q  121 aatataagcaaaaattggtcta-caaacattagtgt-ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttt 203  Q
    ||||||||||||||||| |||| ||||  ||| ||| || ||| ||||||| ||  |||||||| ||||||||||||||||||||    
T  4259408 aatataagcaaaaattgatctaacaaaagttaatgtatttgttcaaaatttatagtaaatacattaacttatgttgactcatttt 4259324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 5026192 - 5026220
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatg 191  Q
    |||||||||||||||||||||||||||||    
T  5026192 aaaatttgtaccaaatacatcaacttatg 5026220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 54235338 - 54235227
Alignment:
Q  107 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 204  Q
    ||||||| | || |||||||| ||||||||| || |||||  ||| |||  |||||| ||||||||||| ||||||||||| |||| |||||||||||||    
T  54235338 tccctccattcttaaatataaacaaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcattttt 54235239  T
Q  205 gcttacattttg 216  Q
    ||||||||||||    
T  54235238 gcttacattttg 54235227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 12276816 - 12276938
Alignment:
Q  109 cctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgc 206  Q
    |||||||||||||||||||| ||| |||||||  ||||  ||| |||  ||| || ||||||| ||| ||||||||||||||||||||||  ||||||||    
T  12276816 cctccgtcctaaaatataagtaaagattggtcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgc 12276915  T
Q  207 ttacattttgggagggaaggagt 229  Q
    ||| ||||||| | |||||||||    
T  12276916 ttatattttggaatggaaggagt 12276938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 30848704 - 30848592
Alignment:
Q  111 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtacc--aaatacatcaacttatgttgactcatttttgc 206  Q
    ||||| ||||||| |||||||||||||||| ||||| |||| |||  || ||| |||||||||||   | |||||||||||||||||||  |||||||||    
T  30848704 tccgttctaaaatgtaagcaaaaattggtcaacaaaaattaatgtattttgttcaaaatttgtacattagatacatcaacttatgttgatccatttttgc 30848605  T
Q  207 ttacattttggga 219  Q
    |||||||||||||    
T  30848604 ttacattttggga 30848592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 4423201 - 4423257
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 219  Q
    |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  4423201 aaaatttgtaccaaatacatcaacttatattgatccatttttgcttacattttggga 4423257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 5496917 - 5496857
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  5496917 tttggttcaaaatttgtaccaaataaatcaacttatattgactcatttttgtttacatttt 5496857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 51714291 - 51714236
Alignment:
Q  164 aaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 219  Q
    |||||||||||| ||| |||||||||||| ||  ||||||||||||||||||||||    
T  51714291 aaatttgtaccagataaatcaacttatgtcgatccatttttgcttacattttggga 51714236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 2734228 - 2734171
Alignment:
Q  172 accaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 229  Q
    ||||||||||| ||||| |||||||| |||||| |||| ||||||||| |||||||||    
T  2734228 accaaatacattaacttttgttgactaatttttacttatattttgggacggaaggagt 2734171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 24980729 - 24980631
Alignment:
Q  119 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    ||||| |||||||||||| ||| ||||| |||| |||  || ||  |||||||||  || |||||||||||||||||||  ||||||| ||||||||||    
T  24980729 aaaatgtaagcaaaaatttgtcaacaaaaattaatgtattttgtacaaaatttgtgtcagatacatcaacttatgttgatccatttttacttacatttt 24980631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 2871550 - 2871607
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggag 220  Q
    ||||||| ||| |||||||||||||| |||| ||  ||||||||||| ||||||||||    
T  2871550 aaaatttatacaaaatacatcaacttttgtttaccgatttttgcttatattttgggag 2871607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 13777193 - 13777136
Alignment:
Q  159 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    ||||||||||||  |||||||||||||||||  |||||||| ||||| ||| ||||||    
T  13777193 gtttaaaatttgatccaaatacatcaacttactttgactcacttttgattatattttg 13777136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 37783907 - 37783960
Alignment:
Q  164 aaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 217  Q
    |||||| ||||| ||||||||||||||||| |||| ||||  ||||||||||||    
T  37783907 aaatttataccacatacatcaacttatgttaactcgttttcacttacattttgg 37783960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 38940748 - 38940776
Alignment:
Q  107 tccctccgtcctaaaatataagcaaaaat 135  Q
    |||||||||||||||||||||||||||||    
T  38940748 tccctccgtcctaaaatataagcaaaaat 38940776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 35938 - 36048
Alignment:
Q  111 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 208  Q
    |||||| ||||||||||  |||||||| || |||| | ||| |||  |||||  |||||||||| |||||||||||| |||| |||||||||||||| ||    
T  35938 tccgtcttaaaatataaataaaaattgatcaacaaccgttaatgtatttggtacaaaatttgtatcaaatacatcaatttatattgactcatttttgttt 36037  T
Q  209 acattttggga 219  Q
    |||||||||||    
T  36038 acattttggga 36048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 32221574 - 32221472
Alignment:
Q  119 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    ||||| |||||||||||| ||| |||||  ||| |||  |||||| ||||||||||||||||||||||| ||||| |||   ||||||||||||||||||    
T  32221574 aaaatgtaagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacattttg 32221475  T
Q  217 gga 219  Q
    |||    
T  32221474 gga 32221472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 26914553 - 26914452
Alignment:
Q  119 aaaatataagcaaaaattggtctacaaacattagtgtttg--gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    ||||| ||||||||||||| || ||||| |||| ||| ||  ||| ||||||| ||| ||||||||||||||| |||| | |||||||||||||||||||    
T  26914553 aaaatgtaagcaaaaattgatcaacaaaaattaatgtatgtggttcaaaatttatactaaatacatcaacttaagttgtc-catttttgcttacattttg 26914455  T
Q  217 gga 219  Q
    |||    
T  26914454 gga 26914452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 31280159 - 31280269
Alignment:
Q  117 ctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattt 214  Q
    |||||||||||| |||||||| || |||||  ||| |||  |||||| ||||||||||||| |||||| || |||||||||  ||||||| ||||| |||    
T  31280159 ctaaaatataagtaaaaattgatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaatttatgttgatccatttttccttaccttt 31280258  T
Q  215 tgggagggaag 225  Q
    ||||| |||||    
T  31280259 tgggatggaag 31280269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 47783122 - 47783184
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 217  Q
    ||||||| |||||||||| || |||||||  |||||||||||||||||||||||| |||||||    
T  47783122 tttggttcaaaatttgtatcagatacatcggcttatgttgactcatttttgcttatattttgg 47783184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 26104270 - 26104322
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    |||||||||| |||| | ||||| |||||||||||||||||||||||||||||    
T  26104270 aaaatttgtatcaaacaaatcaatttatgttgactcatttttgcttacatttt 26104322  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 37330973 - 37331039
Alignment:
Q  157 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggaggga 223  Q
    ||||| ||||||||||| | |||| |||| ||||||| || |||||||||||||||||| |||||||    
T  37330973 tggttcaaaatttgtactagatacgtcaatttatgttaacccatttttgcttacattttcggaggga 37331039  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 11256577 - 11256630
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    |||||||||| ||||||||||||| |||||| | ||||||||||||| ||||||    
T  11256577 aaaatttgtatcaaatacatcaacatatgttaattcatttttgcttatattttg 11256630  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 32221526 - 32221575
Alignment:
Q  167 tttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 216  Q
    |||| ||||||||||| ||||| |||||||| ||||||||||||||||||    
T  32221526 tttgaaccaaatacattaacttttgttgactaatttttgcttacattttg 32221575  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 15282705 - 15282641
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 219  Q
    |||| ||||||||||||| || || ||||||||||||||||  |||||||| ||| |||||||||    
T  15282705 tttgatttaaaatttgtatcagattcatcaacttatgttgatccatttttgtttatattttggga 15282641  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 29637499 - 29637439
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    ||||||| |||||||||| |||||| || || ||||||||||| |||||| ||||||||||    
T  29637499 tttggttcaaaatttgtatcaaatatattaatttatgttgacttattttttcttacatttt 29637439  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 46733069 - 46733121
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    |||||||||| ||||| ||||| |||| ||||||| |||||||||||||||||    
T  46733069 aaaatttgtatcaaatgcatcagcttacgttgacttatttttgcttacatttt 46733121  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 46829047 - 46829082
Alignment:
Q  111 tccgtcctaaaatataagcaaaaattggtctacaaa 146  Q
    |||||||||||||||||||||||||||||| |||||    
T  46829047 tccgtcctaaaatataagcaaaaattggtcaacaaa 46829082  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 46829158 - 46829119
Alignment:
Q  107 tccctccgtcctaaaatataagcaaaaattggtctacaaa 146  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  46829158 tcccttcgtcctaaaatataagcaaaaattggtcaacaaa 46829119  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 18364220 - 18364273
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 217  Q
    |||||||||  || ||||||||||||||||| || ||||||||||||||||||||    
T  18364220 aaaatttgtgtcagatacatcaacttatgttaac-catttttgcttacattttgg 18364273  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 5307341 - 5307433
Alignment:
Q  127 agcaaaaattggtctacaaacattagtg--tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 217  Q
    |||||||||||||| | ||| |||| ||  ||| ||||||||||||||  | |||||||||| ||||| ||  |||||||| |||||||||||    
T  5307341 agcaaaaattggtcaataaaaattaatggatttcgtttaaaatttgtattagatacatcaacgtatgtagatccatttttgtttacattttgg 5307433  T

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Target: scaffold0097 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 37955 - 38015
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||| |||||| |||||||||    
T  37955 tttggtttaaaatttataccaaatacatcaatttatattgactcgtttttgtttacatttt 38015  T

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Target: scaffold0034 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 94998 - 95050
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||||||    
T  94998 aaaatttgtaccaaatacatcaacttatgttgaccaattttttattacatttt 95050  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 13218 - 13278
Alignment:
Q  155 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    ||||||||||||||||||| | |||||||||||||| || |||| ||||| ||||||||||    
T  13218 tttggtttaaaatttgtacaagatacatcaacttatattaactcgtttttacttacatttt 13278  T

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Target: scaffold0027; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 13223 - 13178
Alignment:
Q  172 accaaatacatcaacttatgttgactcatttttgcttacattttgg 217  Q
    ||||||||||| ||||| ||||||  ||||||||||||||||||||    
T  13223 accaaatacattaacttttgttgatccatttttgcttacattttgg 13178  T

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Target: scaffold0072 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 20467 - 20368
Alignment:
Q  118 taaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 215  Q
    |||||| ||||||||||||||||   ||| ||||  || | ||||||||||||||||  |||||||| || ||||||||||  |||||| ||||||||||    
T  20467 taaaatgtaagcaaaaattggtcagtaaaaattaacgtatgtggtttaaaatttgtattaaatacattaatttatgttgacatatttttacttacatttt 20368  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 51279 - 51225
Alignment:
Q  163 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 217  Q
    ||||||| ||||||||||||||||||||||||||    ||||||||| |||||||    
T  51279 aaaatttataccaaatacatcaacttatgttgacaatcttttgcttaaattttgg 51225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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