View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15862_low_5 (Length: 294)

Name: NF15862_low_5
Description: NF15862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15862_low_5
NF15862_low_5
[»] chr3 (6 HSPs)
chr3 (24-279)||(16347164-16347419)
chr3 (24-248)||(47417907-47418131)
chr3 (24-75)||(2309382-2309433)
chr3 (24-75)||(16022525-16022576)
chr3 (58-116)||(22271178-22271235)
chr3 (58-119)||(5553518-5553578)
[»] scaffold0025 (1 HSPs)
scaffold0025 (24-268)||(55391-55635)
[»] chr2 (9 HSPs)
chr2 (24-255)||(18535226-18535457)
chr2 (24-190)||(24808125-24808292)
chr2 (24-190)||(44792812-44792979)
chr2 (24-190)||(24806269-24806435)
chr2 (54-244)||(31939049-31939242)
chr2 (24-75)||(22299979-22300030)
chr2 (58-119)||(6050268-6050328)
chr2 (58-119)||(15409845-15409905)
chr2 (24-75)||(17330563-17330616)
[»] scaffold0146 (2 HSPs)
scaffold0146 (24-276)||(7698-7950)
scaffold0146 (24-75)||(27683-27734)
[»] scaffold0002 (1 HSPs)
scaffold0002 (24-236)||(374673-374885)
[»] scaffold0013 (1 HSPs)
scaffold0013 (24-249)||(241580-241804)
[»] chr4 (15 HSPs)
chr4 (24-236)||(11099011-11099223)
chr4 (46-159)||(19456494-19456607)
chr4 (46-178)||(19460339-19460471)
chr4 (41-169)||(24663403-24663531)
chr4 (43-178)||(19459897-19460032)
chr4 (43-178)||(19458196-19458331)
chr4 (24-75)||(9398719-9398770)
chr4 (24-75)||(18280838-18280889)
chr4 (24-75)||(42872551-42872602)
chr4 (55-123)||(19180479-19180547)
chr4 (58-119)||(15019328-15019388)
chr4 (54-169)||(22474279-22474395)
chr4 (58-119)||(9167231-9167291)
chr4 (58-119)||(15017688-15017748)
chr4 (58-119)||(39488195-39488255)
[»] chr1 (9 HSPs)
chr1 (24-250)||(48463101-48463326)
chr1 (24-276)||(48463560-48463809)
chr1 (24-201)||(40554414-40554591)
chr1 (42-190)||(20759658-20759807)
chr1 (25-75)||(31390467-31390517)
chr1 (24-75)||(6473408-6473459)
chr1 (58-119)||(20127117-20127177)
chr1 (58-119)||(6473820-6473880)
chr1 (58-119)||(22062190-22062250)
[»] scaffold0018 (1 HSPs)
scaffold0018 (24-190)||(69-236)
[»] chr8 (8 HSPs)
chr8 (24-190)||(23015737-23015904)
chr8 (41-169)||(6777643-6777771)
chr8 (24-75)||(8366658-8366709)
chr8 (24-75)||(17277776-17277827)
chr8 (43-170)||(285364-285492)
chr8 (43-170)||(630385-630513)
chr8 (43-170)||(816197-816325)
chr8 (58-119)||(20730920-20730980)
[»] scaffold0139 (1 HSPs)
scaffold0139 (24-190)||(6431-6598)
[»] scaffold0254 (1 HSPs)
scaffold0254 (34-190)||(24239-24396)
[»] chr6 (8 HSPs)
chr6 (34-190)||(2147775-2147932)
chr6 (58-119)||(30518330-30518390)
chr6 (58-116)||(6230684-6230741)
chr6 (58-119)||(18553383-18553443)
chr6 (58-119)||(18781799-18781859)
chr6 (58-119)||(20414951-20415011)
chr6 (58-119)||(20417598-20417658)
chr6 (58-119)||(20419684-20419744)
[»] scaffold0180 (1 HSPs)
scaffold0180 (24-190)||(10778-10946)
[»] scaffold0083 (1 HSPs)
scaffold0083 (24-75)||(35131-35182)
[»] chr7 (5 HSPs)
chr7 (24-75)||(41000180-41000231)
chr7 (58-119)||(9595482-9595542)
chr7 (58-119)||(9646445-9646505)
chr7 (58-119)||(32706385-32706445)
chr7 (55-123)||(12364323-12364391)
[»] chr5 (5 HSPs)
chr5 (24-75)||(38937005-38937056)
chr5 (58-119)||(244486-244546)
chr5 (43-99)||(27402111-27402167)
chr5 (58-119)||(4568297-4568357)
chr5 (58-119)||(29950163-29950223)
[»] scaffold0585 (1 HSPs)
scaffold0585 (58-120)||(917-978)
[»] scaffold0096 (1 HSPs)
scaffold0096 (58-119)||(22660-22720)
[»] scaffold0026 (1 HSPs)
scaffold0026 (24-75)||(87109-87162)
[»] scaffold0010 (1 HSPs)
scaffold0010 (58-119)||(136803-136863)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 24 - 279
Target Start/End: Original strand, 16347164 - 16347419
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
16347164 tacactttgtgtgttgtgaaactttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctacc 16347263  T
124 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttattattgtattttatccaacattca 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16347264 aaattaaacatcttccttggattgggaacttgtttggttatcatttctgtctatttccaccattcttcactttttattattgtattttatccaacattca 16347363  T
224 caaaaatacaaaactaaaatttcaacctatttctgacattcatcaagtggtattca 279  Q
    |||||||||||||||||||||||||||||||| || |  |||||||||||||||||    
16347364 caaaaatacaaaactaaaatttcaacctatttttgtctctcatcaagtggtattca 16347419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 24 - 248
Target Start/End: Complemental strand, 47418131 - 47417907
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
47418131 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctacc 47418032  T
124 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttattattgtattttatccaacattca 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47418031 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttattattgtattttatccaacattca 47417932  T
224 caaaaatacaaaactaaaatttcaa 248  Q
    |||||||||||||||||||||||||    
47417931 caaaaatacaaaactaaaatttcaa 47417907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 2309433 - 2309382
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
2309433 tacactttgtgtgttgtgaaactttgcttctttttggttctggattgaacca 2309382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 16022576 - 16022525
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||    
16022576 tacactttgtgtgttgtgaagctttggttctttatggttctggattgaacca 16022525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 22271178 - 22271235
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatc 116  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| |||| ||||||||||    
22271178 tggttctggattgaaccat-cattgatcttatcaagaaatcacatttcttgtggcgatc 22271235  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 5553518 - 5553578
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||| ||||||||||||||||||| ||  |||| |||||||||||||    
5553518 tggttctggattgaaccat-cattgatcttatcaagaaatcatatttcttgtggcgatcctc 5553578  T

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Target: scaffold0025 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 55391 - 55635
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
55391 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatctcatcaagaaaccacgtttcttgtggcgatcctctacc 55490  T
124 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttattattgtattttatccaacattca 223  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
55491 aaattaaacatcttccttggattgggaacttgtttggttatcatttctttctatttccaccattcttcactttttattattgtattttatccaacattca 55590  T
224 caaaaatacaaaactaaaatttcaacctatttctgacattcatca 268  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
55591 caaaaatacaaaactaaaatttcaacctatttttgtcattcatca 55635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 24 - 255
Target Start/End: Complemental strand, 18535457 - 18535226
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
18535457 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgtattgatcttatcaagaaaccacgtttcttgtggcgatcctctacc 18535358  T
124 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttattattgtattttatccaacattca 223  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
18535357 aaattaaacatcttccttggattgggaacttgtttggttatcatttctgtctatttccaccattcttcaaattttattattgtattttatccaacattca 18535258  T
224 caaaaatacaaaactaaaatttcaacctattt 255  Q
    ||||||||||||||||||||||||||||||||    
18535257 caaaaatacaaaactaaaatttcaacctattt 18535226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 24808292 - 24808125
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
24808292 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctacc 24808193  T
124 aaattaaacatcttccttggattgggaatttgtttggttatca-tttctgtctatttccaccattctt 190  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||    
24808192 aaattaaacatcttccttggattgggaatttgtttggttaccattttctgcctatttccatcattctt 24808125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 44792979 - 44792812
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
44792979 tacactttgtgtgttgtgaagctttgcttctttgtggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctatc 44792880  T
124 aaattaaacatcttccttggattgggaatttgtttggttatca-tttctgtctatttccaccattctt 190  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||    
44792879 gaattaaacatcttccttggattgggaatttgtttggttatcattttctgcctatttccatcattctt 44792812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 24806435 - 24806269
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
24806435 tacactttgtgtgttgtgaagctttgcttcttttttgttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggtgatcctctacc 24806336  T
124 aaattaaacatcttccttggattgggaatttgtttggttatca-tttctgtctatttccaccattctt 190  Q
    ||| |||||||||| |||||||||| |||||||||||||| || |||||| ||||||||| |||||||    
24806335 aaa-taaacatctttcttggattggaaatttgtttggttaccattttctgcctatttccatcattctt 24806269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 244
Target Start/End: Original strand, 31939049 - 31939242
Alignment:
54 tttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctaccaaattaaacatcttccttggattgggaatt 153  Q
    ||||| ||| |||||||||  || | |||||||||||||||||||| ||||| |||||||||||||||| || || | ||||||||||  |||||||| |    
31939049 tttttagttttggattgaataatactttgatcttatcaagaaaccatgtttcttgtggcgatcctctactaagttgatcatcttccttaaattgggaaat 31939148  T
154 tgt-ttggttatcatttctgtcta-tttccaccattcttca-ctttttattattgtattttatccaacattcacaaaaatacaaaactaaaatt 244  Q
    ||| || | || |||||||||||| |||||||| ||||||| ||||||| |||  ||||||||||||||||||||||||||||||| |||||||    
31939149 tgtattagctaccatttctgtctattttccaccgttcttcacctttttaatatcatattttatccaacattcacaaaaatacaaaattaaaatt 31939242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 22300030 - 22299979
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||    
22300030 tacactttgtgtgttgtgaagctttgcttccttttggttttggattgaacca 22299979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 6050328 - 6050268
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  |||| |||||||||||||    
6050328 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 6050268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 15409845 - 15409905
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  |||| |||||||||||||    
15409845 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 15409905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 17330563 - 17330616
Alignment:
24 tacactttgtgtgttgtga-agctttg-cttctttttggttctggattgaacca 75  Q
    |||| |||||||||||||| ||||||| || |||||||||||||||||||||||    
17330563 tacaatttgtgtgttgtgagagctttgtctcctttttggttctggattgaacca 17330616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 24 - 276
Target Start/End: Original strand, 7698 - 7950
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||    
7698 tacactttgtgtgttgtgaagttttgcttctttttggttctggattggaccatggattgatcttatcaagaaaccacgtttcttgtggagatcctctacc 7797  T
124 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttattattgtattttatccaacattca 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
7798 aaattaaacatcttccttggattgggaatttgtttggttatcatttttgtctatttccaccattcttcactttttattattttattttatccaacattca 7897  T
224 caaaaatacaaaactaaaatttcaacctatttctgacattcatcaagtggtat 276  Q
    |||||||||||||||||||||||||||||||| || | |||||||||| ||||    
7898 caaaaatacaaaactaaaatttcaacctatttttgtccttcatcaagtagtat 7950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 27683 - 27734
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
27683 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 27734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 374885 - 374673
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
374885 tacactttgtgtgttgtgaagctttgcttccttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctacc 374786  T
124 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttattattgtattttatccaacattca 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
374785 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttattattgtattttatccaacattca 374686  T
224 caaaaatacaaaa 236  Q
    ||||| |||||||    
374685 caaaattacaaaa 374673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 249
Target Start/End: Original strand, 241580 - 241804
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||    
241580 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcgttgatcttatcaagaaaccacgtttcttgtggtgatcctctacc 241679  T
124 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttattattgtattttatccaacattca 223  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
241680 aaattaaacatcttccttggattgggaatttgtttggttatca-ttctgtctatttccaccattcttcactttttattattgtattttatccaacatcca 241778  T
224 caaaaatacaaaactaaaatttcaac 249  Q
    |||| |||||||||||||||||||||    
241779 caaatatacaaaactaaaatttcaac 241804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 11099011 - 11099223
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||    
11099011 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcaatcctttacc 11099110  T
124 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttattattgtattttatccaacattca 223  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
11099111 aaattaaacatcttccttggattgagaatttgtttggttatcatttctgtctatttccaccattcttcactttttgttattgtattttatccaacattca 11099210  T
224 caaaaatacaaaa 236  Q
    |||||||||||||    
11099211 caaaaatacaaaa 11099223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 19456494 - 19456607
Alignment:
46 tttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctaccaaattaaacatcttccttggat 145  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||  |||||| |||||||||||||||| ||| |||||||||| ||| |||    
19456494 tttgcttctttatggttctggattgaatcatgctttgatcttatcaagatacttcgtttcttgtggcgatcctctacgaaactaaacatcttgcttagat 19456593  T
146 tgggaatttgtttg 159  Q
    || |||||||||||    
19456594 tgagaatttgtttg 19456607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 19460471 - 19460339
Alignment:
46 tttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctaccaaattaaacatcttccttggat 145  Q
    ||||||| ||| |||||||| |||||||||||  |||||||||||||||||| | ||||| |||| ||| ||||||||||  |||||||||||||| |||    
19460471 tttgcttatttatggttctgaattgaaccatgttttgatcttatcaagaaactatgtttcttgtgccgaccctctaccaagctaaacatcttccttagat 19460372  T
146 tgggaatttgtttggttatcatttctgtctatt 178  Q
    || |||||||||||||| |||||| ||| ||||    
19460371 tgagaatttgtttggttttcatttatgtttatt 19460339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 24663531 - 24663403
Alignment:
41 gaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctaccaaattaaacatcttcct 140  Q
    |||||||| |||||||| |||||| |||||||||||| ||| |||||||||| |||||||||||| |||||||||||||||| ||   | ||||||||||    
24663531 gaagctttacttcttttgggttctagattgaaccatgaatttatcttatcaaaaaaccacgtttcttgtggcgatcctctacgaagcaatacatcttcct 24663432  T
141 tggattgggaatttgtttggttatcattt 169  Q
    || ||||  |||||||||||||| |||||    
24663431 tgaattgaaaatttgtttggttaccattt 24663403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 19459897 - 19460032
Alignment:
43 agctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctaccaaattaaacatcttccttg 142  Q
    |||||||||| | | |||||||  |||||||||  | |||||||||| |||||| || ||||| |||||||||||||||||||  ||||||||| |||||    
19459897 agctttgcttatctatggttctaaattgaaccaaactttgatcttataaagaaagcatgtttcttgtggcgatcctctaccaagctaaacatctaccttg 19459996  T
143 gattgggaatttgtttggttatcatttctgtctatt 178  Q
    ||||| |||||||||||||   ||||||||||||||    
19459997 gattgagaatttgtttggtgtccatttctgtctatt 19460032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 19458196 - 19458331
Alignment:
43 agctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctaccaaattaaacatcttccttg 142  Q
    |||||||||||||| || || || ||| |||||||| |||||||||| |||||||  |||||| |||| ||||| | | ||||  |||||||||||||||    
19458196 agctttgcttctttatgattttgaatttaaccatgctttgatcttataaagaaacttcgtttcttgtgacgatcgtatcccaagctaaacatcttccttg 19458295  T
143 gattgggaatttgtttggttatcatttctgtctatt 178  Q
     |||||||||||||| ||||  ||||||||||||||    
19458296 tattgggaatttgttgggtttccatttctgtctatt 19458331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 9398770 - 9398719
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
9398770 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 9398719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 18280889 - 18280838
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
18280889 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 18280838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 42872602 - 42872551
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
42872602 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 42872551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 19180547 - 19180479
Alignment:
55 ttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    |||||||||||||||| ||||    |||||||||||||||||||||||||| |||||||||||||||||    
19180547 ttttggttctggattggaccaaattttgatcttatcaagaaaccacgtttcttgtggcgatcctctacc 19180479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 15019388 - 15019328
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  |||| |||||||||||||    
15019388 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 15019328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 22474279 - 22474395
Alignment:
54 tttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcg-atcctctaccaaattaaacatcttccttggattgggaat 152  Q
    ||||| ||||||||||||||||||| || || ||||||| ||| |||||||  |||| || ||||||||| ||  |||||| |||||||  ||| |||||    
22474279 ttttttgttctggattgaaccatgccttaattttatcaaaaaatcacgttttttgtgacgaatcctctactaagctaaacaacttccttaaattaggaat 22474378  T
153 ttgtttggttatcattt 169  Q
    || |||| || ||||||    
22474379 ttatttgattttcattt 22474395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 9167231 - 9167291
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||  | ||||||||||||||||| ||  |||| |||||||||||||    
9167231 tggttctggattgaaccaacc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 9167291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 15017748 - 15017688
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  |||| | |||||||||||    
15017748 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttatggcgatcctc 15017688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 39488255 - 39488195
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||| ||| | ||||||||||||||||| ||  |||| |||||||||||||    
39488255 tggttctggattgaatcatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 39488195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 48463101 - 48463326
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||| |||| ||||||||||||    
48463101 tacactttgtgtgttgtgaaattttgcttcttttttgttctggattgaaccatt-attgatcttatcaagaaaccacgtttcttgtgacgatcctctacc 48463199  T
124 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttattattgtattttatccaacattca 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
48463200 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtcaatttccaccattcttcactttttattattgtattttatccaacattca 48463299  T
224 caaaaatacaaaactaaaatttcaacc 250  Q
    ||||||||||||||| |||||||||||    
48463300 caaaaatacaaaactgaaatttcaacc 48463326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 24 - 276
Target Start/End: Complemental strand, 48463809 - 48463560
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||    
48463809 tacactttgtgtgttgtgaagctttgcttctttttg-ttctcgattgaaccat-cattgatcttatcaagaaaccacgtttcttgtgtcgatcttctacc 48463712  T
124 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttattattgtattttatccaacattca 223  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |    
48463711 aaattaaatatcttccttggattgagaatttgtttggttatcatttctctctatttccaccattcttcattttttattattgtattttatccaacattta 48463612  T
224 caaaaatacaaaactaaaatttcaacctatttctgacattcatcaagtggtat 276  Q
    |||||||||||||||||||||||||||| ||| || | |||||||||||||||    
48463611 caaaaatacaaaactaaaatttcaacct-tttttgtccttcatcaagtggtat 48463560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 40554414 - 40554591
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
40554414 tacactttgtgtgttgtgaagctttgcttctttgtggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctatc 40554513  T
124 aaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttatt 201  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40554514 gaattaaacatcttccttggattgggaatttgtttggttatcatttctgtctatttccaccattcttcactttttatt 40554591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 20759658 - 20759807
Alignment:
42 aagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctaccaaattaaacatcttcctt 141  Q
    ||||||||||||||||||||| |||||| |||||||  ||||||||||||| |||| || |||  | |||||||||||||||||  ||||||||||||||    
20759658 aagctttgcttctttttggttttggattaaaccatgacttgatcttatcaaaaaactacattttttatggcgatcctctaccaagctaaacatcttcctt 20759757  T
142 ggattgggaatttgtttggttatca-tttctgtctatttccaccattctt 190  Q
     |||||||| ||||||| |||| || |||| ||||||||||| |||||||    
20759758 agattgggattttgtttagttaccattttcggtctatttccatcattctt 20759807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 31390467 - 31390517
Alignment:
25 acactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
31390467 acactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 31390517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 6473408 - 6473459
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||    
6473408 tacactttgtgtgttgtgaagctacgcttctttttggttctggattgaacca 6473459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 20127117 - 20127177
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  |||| |||||||||||||    
20127117 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 20127177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 6473820 - 6473880
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||| ||| | ||||||||||||||||| ||| |||| |||| ||||||||    
6473820 tggttctggattgaatcatcc-ttgatcttatcaagaaatcacatttcttgtgacgatcctc 6473880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 22062250 - 22062190
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||  | ||||||||||||||||| ||  |||| |||||||||||||    
22062250 tggttctggattgaaccaacc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 22062190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 236 - 69
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
236 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctacc 137  T
124 aaattaaacatcttccttggattgggaatttgtttggttatca-tttctgtctatttccaccattctt 190  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||    
136 aaattaaacatcttccttggattgggaatttgtttggttaccattttctgcctatttccatcattctt 69  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 23015904 - 23015737
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
23015904 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctacc 23015805  T
124 aaattaaacatcttccttggattgggaatttgtttggttatca-tttctgtctatttccaccattctt 190  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||    
23015804 aaattaaacatcttccttggattgggaatttgtttggttaccattttctgcctatttccatcattctt 23015737  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 6777771 - 6777643
Alignment:
41 gaagctttgcttctttttg-gttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctaccaaattaaacatcttcc 139  Q
    ||||||||||||||||||  ||| || |||||| ||||  || ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||    
6777771 gaagctttgcttcttttttagttatg-attgaatcatgacttaatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaacaacttcc 6777673  T
140 ttggattgggaatttgtttggttatcattt 169  Q
    |||||||| ||||||||||||||| |||||    
6777672 ttggattgagaatttgtttggttaccattt 6777643  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 8366658 - 8366709
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
8366658 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 8366709  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 17277827 - 17277776
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
17277827 tacactttgtgtgttgtgaagctttgcttctttttggttctagattgaacca 17277776  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 285492 - 285364
Alignment:
43 agctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctaccaaattaaacatcttccttg 142  Q
    ||||||| |||| |||| |||| ||||||| ||||  ||||||||||||| |||| | ||||| | || ||||||||||||||  | | ||| |||||||    
285492 agctttgtttctgtttgattctagattgaatcatgttttgatcttatcaaaaaacaatgtttcttatgacgatcctctaccaagcttatcatattccttg 285393  T
143 gattgggaatttgt-ttggttatcatttc 170  Q
    ||||| |||||||| |||||| |||||||    
285392 gattgagaatttgtgttggttttcatttc 285364  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 630385 - 630513
Alignment:
43 agctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctaccaaattaaacatcttccttg 142  Q
    ||||||| |||| |||| |||| ||||||| ||||  ||||||||||||| |||| | ||||| | || ||||||||||||||  | | ||| |||||||    
630385 agctttgtttctgtttgattctagattgaatcatgttttgatcttatcaaaaaacaatgtttcttatgacgatcctctaccaagcttatcatattccttg 630484  T
143 gattgggaatttgt-ttggttatcatttc 170  Q
    ||||| |||||||| |||||| |||||||    
630485 gattgagaatttgtgttggttttcatttc 630513  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 816197 - 816325
Alignment:
43 agctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctaccaaattaaacatcttccttg 142  Q
    ||||||| |||| |||| |||| ||||||| ||||  ||||||||||||| |||| | ||||| | || ||||||||||||||  | | ||| |||||||    
816197 agctttgtttctgtttgattctagattgaatcatgttttgatcttatcaaaaaacaatgtttcttatgacgatcctctaccaagcttatcatattccttg 816296  T
143 gattgggaatttgt-ttggttatcatttc 170  Q
    ||||| |||||||| |||||| |||||||    
816297 gattgagaatttgtgttggttttcatttc 816325  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 20730920 - 20730980
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||  | ||||||||||||||||| ||  |||| |||||||||||||    
20730920 tggttctggattgaaccaacc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 20730980  T

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Target: scaffold0139 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 6431 - 6598
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
6431 tacactttgtgtgatgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctacc 6530  T
124 aaattaaacatcttccttggattgggaatttgtttggttatc-atttctgtctatttccaccattctt 190  Q
    ||||||||||||||| |||||||||||||||||||||||| | ||||||| ||||||||| |||||||    
6531 aaattaaacatcttctttggattgggaatttgtttggttaccaatttctgcctatttccatcattctt 6598  T

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Target: scaffold0254 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 24396 - 24239
Alignment:
34 gtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctaccaaattaaaca 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
24396 gtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaaca 24297  T
134 tcttccttggattgggaatttgtttggttatca-tttctgtctatttccaccattctt 190  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||    
24296 tcttccttggattgggaatttgtttggttaccattttctgcctatttccatcattctt 24239  T

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Target: chr6 (Bit Score: 134; Significance: 9e-70; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 2147932 - 2147775
Alignment:
34 gtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctaccaaattaaaca 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
2147932 gtgttgtgaagctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaaca 2147833  T
134 tcttccttggattgggaatttgtttggttatca-tttctgtctatttccaccattctt 190  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||    
2147832 tcttccttggattgggaatttgtttggttaccattttctgcctatttccatcattctt 2147775  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 30518390 - 30518330
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  |||| |||||||||||||    
30518390 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 30518330  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 6230741 - 6230684
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatc 116  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| |||| | ||||||||    
6230741 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttatggcgatc 6230684  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 18553383 - 18553443
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||  | ||||||||||||||||| ||  |||| |||||||||||||    
18553383 tggttctggattgaaccaacc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 18553443  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 18781799 - 18781859
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||  | ||||||||||||||||| ||  |||| |||||||||||||    
18781799 tggttctggattgaaccaacc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 18781859  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 20415011 - 20414951
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||  | ||||||||||||||||| ||  |||| |||||||||||||    
20415011 tggttctggattgaaccaacc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 20414951  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 20417658 - 20417598
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||  | ||||||||||||||||| ||  |||| |||||||||||||    
20417658 tggttctggattgaaccaacc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 20417598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 20419744 - 20419684
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||  | ||||||||||||||||| ||  |||| |||||||||||||    
20419744 tggttctggattgaaccaacc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 20419684  T

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Target: scaffold0180 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 10946 - 10778
Alignment:
24 tacactttgtgtgttgtgaagctttgcttcttttt-ggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctac 122  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
10946 tacactttgcgtgttgtgaagctttgcttcttttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctac 10847  T
123 caaattaaacatcttccttggattgggaatttgtttggttatca-tttctgtctatttccaccattctt 190  Q
    |||||||||||||||||||| |||||||||||||||||||| || |||||| ||||||||| |||||||    
10846 caaattaaacatcttccttgaattgggaatttgtttggttaccattttctgcctatttccatcattctt 10778  T

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Target: scaffold0083 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 35182 - 35131
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
35182 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 35131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 41000231 - 41000180
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
41000231 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 41000180  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 9595542 - 9595482
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  |||| |||||||||||||    
9595542 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 9595482  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 9646505 - 9646445
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  |||| |||||||||||||    
9646505 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 9646445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 32706385 - 32706445
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| |||| |||||| ||||||    
32706385 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcaatcctc 32706445  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 12364391 - 12364323
Alignment:
55 ttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctctacc 123  Q
    |||||||||||||||| ||||    ||||||||||||| ||||| |||||| |||||||||||| ||||    
12364391 ttttggttctggattggaccaaattttgatcttatcaaaaaaccgcgtttcttgtggcgatcctttacc 12364323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 38937056 - 38937005
Alignment:
24 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
38937056 tacactttgtgtgttgtgaagctttgcttctttttggttctggattgaacca 38937005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 244546 - 244486
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  |||| |||||||||||||    
244546 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 244486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 27402111 - 27402167
Alignment:
43 agctttgcttctttttggttctggattgaaccatgcattgatcttatcaagaaacca 99  Q
    |||||||||||||||| |||||  |||||||||||| |||||||||| || ||||||    
27402111 agctttgcttcttttttgttctaaattgaaccatgcgttgatcttataaaaaaacca 27402167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 4568297 - 4568357
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||| | ||||||||||||| ||| ||  |||| |||||||||||||    
4568297 tggttctggattgaaccattc-ttgatcttatcaaaaaatcatatttcttgtggcgatcctc 4568357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 29950163 - 29950223
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||  | ||||||||||||||||| ||  |||| |||||||||||||    
29950163 tggttctggattgaaccaacc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 29950223  T

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Target: scaffold0585 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 978 - 917
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctct 120  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  |||| ||||||||||||||    
978 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctct 917  T

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Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 22720 - 22660
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  |||| |||||||||||||    
22720 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 22660  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 87109 - 87162
Alignment:
24 tacactttgtgtgttgtga-agctttgcttcttttt-ggttctggattgaacca 75  Q
    ||||||||||||||||||| |||||||  ||||||| |||||||||||||||||    
87109 tacactttgtgtgttgtgagagctttgtctctttttcggttctggattgaacca 87162  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 136803 - 136863
Alignment:
58 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcatgtggcgatcctc 119  Q
    |||||||||||| |||||| | ||||||||||||||||| ||  |||| |||||||||||||    
136803 tggttctggattaaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 136863  T

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