View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15862_low_7 (Length: 250)
Name: NF15862_low_7
Description: NF15862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15862_low_7 |
 | |
|
| [»] scaffold0025 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
| [»] scaffold0146 (1 HSPs) |
| | |
|
| [»] scaffold0026 (1 HSPs) |
| | |
|
| [»] scaffold0269 (1 HSPs) |
| | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
|
| [»] scaffold0321 (1 HSPs) |
| | |
|
| [»] scaffold0139 (2 HSPs) |
| | |
|
| [»] scaffold0180 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 16347136 - 16346898
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16347136 |
cttcattattttcgccccctttatataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcctaggtggctagtta |
16347037 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16347036 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaatgctt |
16346937 |
T |
|
| Q |
201 |
attatggctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16346936 |
attatggctagacgttacatttccacaaacaccaccttt |
16346898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 47418158 - 47418396
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47418158 |
cttcattattttcgccccctttatataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcctaggtggctagtta |
47418257 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47418258 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaatgctt |
47418357 |
T |
|
| Q |
201 |
attatggctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47418358 |
attatggctagacgttacatttccacaaacaccaccttt |
47418396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5553973 - 5554211
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
5553973 |
cttcattattttcgccccctttatataggaaataggcttggatgctgaaaagcttacaatcatagcataattagtgttataactcctaggttgctagtta |
5554072 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5554073 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttacacattgatttgtgaaggctt |
5554172 |
T |
|
| Q |
201 |
attatggctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5554173 |
attatggctagacgttacaattccacaaacaccaccttt |
5554211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 23460704 - 23460466
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
23460704 |
cttcattattttcgccccctttttataggaaataggcttggaagctgaaaaacttacaatcatagcataattagtgttataattcctaggtggctagtta |
23460605 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23460604 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggttgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
23460505 |
T |
|
| Q |
201 |
attatggctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23460504 |
attatggctagacgttacaattccacaaacaccaccttt |
23460466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 103 - 235
Target Start/End: Complemental strand, 47566875 - 47566743
Alignment:
| Q |
103 |
acaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttat |
202 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47566875 |
acaagagaggttacaatttaattggatctttgaagctggtggttgatcaatgcttgagaaggttacatattcatttgcacattgatttgtgaaagcttat |
47566776 |
T |
|
| Q |
203 |
tatggctagacgttacatttccacaaacaccac |
235 |
Q |
| |
|
||| ||||| ||||| ||||||||||||||| |
|
|
| T |
47566775 |
tatttctagaaattacaattccacaaacaccac |
47566743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 25532004 - 25531900
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
234 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
25532004 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacca |
25531905 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
|
||||| |
|
|
| T |
25531904 |
ccttt |
25531900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 18535484 - 18535722
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18535484 |
cttcattattttcgccccctttatataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcctaggtggctagtta |
18535583 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18535584 |
ttacaaaaaaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaatgctt |
18535683 |
T |
|
| Q |
201 |
attatggctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18535684 |
attatggctagacgttacatttccacaaacaccaccttt |
18535722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 24806465 - 24806704
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
24806465 |
cttcattattttcgccccctttatatagaaaataggcttggatgctgaaaagcttacaatcatagcataattagtgttataactcctaggtggctagtta |
24806564 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24806565 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttttgaaggctt |
24806664 |
T |
|
| Q |
201 |
attatgg-ctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
24806665 |
attatggcctagacgttacaattccacaaacaccaccttt |
24806704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 24808321 - 24808560
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
24808321 |
cttcattattttcgccccctttatataggaaatcggcttggatgctgaaaagcttacaatcatagcataattagtgttataactcctaggtggctagtta |
24808420 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24808421 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggcggatcaatgcatgagaaggttacatattcatttgcacattgatttttgaaggctt |
24808520 |
T |
|
| Q |
201 |
attatgg-ctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
||||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
24808521 |
attatggcctagccgttacaattccacaaacaccaccttt |
24808560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 22300212 - 22300316
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
234 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
22300212 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacca |
22300311 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
|
||||| |
|
|
| T |
22300312 |
ccttt |
22300316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 44793007 - 44793107
Alignment:
| Q |
2 |
ttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagttat |
101 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||| | ||||||||| ||||||||| ||| || |||| || |||||||||| ||||||| |||| |
|
|
| T |
44793007 |
ttcattattttcgccccctttaaataggtaataggctagaatgctgaaaagcttacaattatatcaagattaatgaaataactcttatgtggctaattat |
44793106 |
T |
|
| Q |
102 |
t |
102 |
Q |
| |
|
| |
|
|
| T |
44793107 |
t |
44793107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 41000260 - 41000498
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41000260 |
cttcattattttcgccccctttatataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcctaggtggctagtta |
41000359 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41000360 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgaaaaggttacatattcatttgcacattgatttgtgaaggatt |
41000459 |
T |
|
| Q |
201 |
attatggctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
41000460 |
attatggctagacgttacaattccataaacaccaccttt |
41000498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 87 - 239
Target Start/End: Original strand, 40998487 - 40998639
Alignment:
| Q |
87 |
taggtggctagttattacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40998487 |
taggtggctagttattacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgaaaaggttacatattcatttgcacattg |
40998586 |
T |
|
| Q |
187 |
atttgtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
40998587 |
atttgtgaaggattattatggctagacgttacaattccataaacaccaccttt |
40998639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 7843044 - 7842940
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
234 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
7843044 |
aagttggtggctaatcaatgcatgaagaggttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacct |
7842945 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
|
||||| |
|
|
| T |
7842944 |
ccttt |
7842940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 9595752 - 9595856
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
234 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
9595752 |
aagttggtggctaatcaatgcatgaggtggttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacct |
9595851 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
|
||||| |
|
|
| T |
9595852 |
ccttt |
9595856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 9646715 - 9646819
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
234 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
9646715 |
aagttggtggctaatcaatgcatgaggtggttacatattcatttggacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacct |
9646814 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
|
||||| |
|
|
| T |
9646815 |
ccttt |
9646819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 9647251 - 9647355
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
234 |
Q |
| |
|
|||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
9647251 |
aagttggtggctaataaatgcatgaggaggttacatattcatttgcacattgatttgtaaaggctgattatttctagacgttacaattccacaaacacct |
9647350 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
|
||||| |
|
|
| T |
9647351 |
ccttt |
9647355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 55351 - 55121
Alignment:
| Q |
9 |
ttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagttattacaaaa |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
55351 |
ttttcgccccctttatataggaaataggcttggatgctgaaaagcttacaatcatagcataattagtgttataactcctaggtggttagttattacaaaa |
55252 |
T |
|
| Q |
109 |
gaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55251 |
gaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggc |
55152 |
T |
|
| Q |
209 |
tagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
55151 |
tagacgttacaattccacaaacaccaccttt |
55121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 241548 - 241310
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
241548 |
cttcattattttcgccccctatatataggaaataggcttggatgctgaaaagcttacaatcatagcataattagtgttataactcctaggtggctagtta |
241449 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
241448 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttatatattcatttgcacattgatttttgaaggctt |
241349 |
T |
|
| Q |
201 |
attatggctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
241348 |
attatgtctagacgttacaattccacaaacaccaccttt |
241310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 265 - 504
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
265 |
cttcattattttcgccccctttatataggaaatcggcttggatgctgaaaagcttacaatcatagcataattagtgttataactcctaggtggctagtta |
364 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
365 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggcggatcaatgcatgagaaggttacatattcatttgcacattgatttttgaaggctt |
464 |
T |
|
| Q |
201 |
attatgg-ctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
||||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
465 |
attatggcctagccgttacaattccacaaacaccaccttt |
504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 17277857 - 17278095
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||||| |||| ||||| ||| ||||||||||||| ||||||| |||||||||||| | |||||||||||| |
|
|
| T |
17277857 |
cttcattatttccgccccctttatataggaaataaacttgaatgctaaaaagcttacaatcatagcataatttgtgttataactccttggtggctagtta |
17277956 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17277957 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcattttcacattgatttgtgaaggctt |
17278056 |
T |
|
| Q |
201 |
attatggctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
17278057 |
attatgtctagacgttacaattccacaaacaccaccttt |
17278095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 8366475 - 8366371
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
234 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
8366475 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacca |
8366376 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
|
||||| |
|
|
| T |
8366375 |
ccttt |
8366371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9398801 - 9399039
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||| | |||||| |||| |||||||||||||| |||||||||||| ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
9398801 |
cttcattattttcgccccctctatatagggaataaacttggatgctgaaaaacttacaatcatagcataattagtgctataactcctaggtggctagtta |
9398900 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9398901 |
ttacaaaagaggttacaatttaattggatctttaaagttagtggctgatcaatgcatgagaaggttacatattcatttgcacatttatttgtgaaggctt |
9399000 |
T |
|
| Q |
201 |
attatggctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
9399001 |
attatgtctagacgttacaattccacaaacaccgccttt |
9399039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 39488466 - 39488570
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
234 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| || ||||||||||| |
|
|
| T |
39488466 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaagacttattatttctagacgttacaatttcacaaacacca |
39488565 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
|
||||| |
|
|
| T |
39488566 |
ccttt |
39488570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 15017959 - 15018057
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacc |
233 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
15017959 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc |
15018057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 15019599 - 15019697
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacc |
233 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
15019599 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc |
15019697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 13518276 - 13518380
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
234 |
Q |
| |
|
|||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| |||||||||||||| |
|
|
| T |
13518276 |
aagttggtggctaataaatgcatgaggaggttacatattcatttgcacattgatttgtaaaggctaattatttctagacgttacaattccacaaacacca |
13518375 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
|
||||| |
|
|
| T |
13518376 |
ccttt |
13518380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 9167021 - 9166926
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaac |
230 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
9167021 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaac |
9166926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 11098983 - 11098883
Alignment:
| Q |
2 |
ttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagttat |
101 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||| | ||||||||| ||||||||| ||| || |||| || |||||||||| ||||||| |||| |
|
|
| T |
11098983 |
ttcattattttcgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaagattaatgaaataactcttatgtggctaattat |
11098884 |
T |
|
| Q |
102 |
t |
102 |
Q |
| |
|
| |
|
|
| T |
11098883 |
t |
11098883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 42872630 - 42872730
Alignment:
| Q |
2 |
ttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagttat |
101 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||| | ||||||||| |||||||| ||| || |||| || |||||||||| ||||||| |||| |
|
|
| T |
42872630 |
ttcattattttcgccccctttatataggtaataggctagaatgctgaaaaacttacaattatatcaagattaatgaaataactcttatgtggctaattat |
42872729 |
T |
|
| Q |
102 |
t |
102 |
Q |
| |
|
| |
|
|
| T |
42872730 |
t |
42872730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 21377733 - 21377633
Alignment:
| Q |
2 |
ttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagttat |
101 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||| ||| | ||||| ||| ||||||||| ||| ||| |||| || |||||||||| || |||| |||| |
|
|
| T |
21377733 |
ttcattattttcgccccctttatataggtaatatgctagaatgctaaaaagcttacaattatatcatgattaatgaaataactcttatgtagctaattat |
21377634 |
T |
|
| Q |
102 |
t |
102 |
Q |
| |
|
| |
|
|
| T |
21377633 |
t |
21377633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 18280924 - 18281017
Alignment:
| Q |
9 |
ttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagttatt |
102 |
Q |
| |
|
|||||||||||||| |||||| |||||| | | ||||||||| || |||||| ||| || |||| || |||||||||| ||||||| ||||| |
|
|
| T |
18280924 |
ttttcgccccctttatataggtaataggatagaatgctgaaaagcatacaattatatcaagattaatgaaataactcttatgtggctaattatt |
18281017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 27654 - 27480
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27654 |
cttcattattttcgccccctttatataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcctaggtggctagtta |
27555 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattca |
175 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27554 |
ttacaaaagaggttacagtttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattca |
27480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 87080 - 86843
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
87080 |
cttcattattttcgccccctttatataggaaataggctaggatgctaaaaagcttacaatcatagtataattagtgttataactcctaggtggctagtta |
86981 |
T |
|
| Q |
101 |
ttacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggctt |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||| |||||| ||||||| ||||| |||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
86980 |
ttacaagagaggttacaatttaattggatcttcgaagtt-gtggctaatcaatggatgaggaggttacatattgattttcacattgatttgtgaaggctt |
86882 |
T |
|
| Q |
201 |
attatggctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
86881 |
attatttatagacgttacaattccacaaacaccaccttt |
86843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 31390434 - 31390245
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaat-gcttacaatcataacataattagtgttataactcttaggtggctagtt |
99 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
31390434 |
cttcattattttcgccccctttatataggaaataggctcggatgctgaaaaagtttacaatcatagcataattagtgttataacttctaggtggctagtt |
31390335 |
T |
|
| Q |
100 |
attacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31390334 |
attacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatt |
31390245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 72 - 239
Target Start/End: Complemental strand, 20759527 - 20759360
Alignment:
| Q |
72 |
tagtgttataactcttaggtggctagttattacaaaagaggttacaatttaattggatctttaaagttggtggctgatcaatgcatgagaaggttacata |
171 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||| |
|
|
| T |
20759527 |
tagtgttataactcctaggttgctagttattagaagagaggttacaatttaattggatctttgaagttggtcgctgatcaatgcatgaggatgttacata |
20759428 |
T |
|
| Q |
172 |
ttcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
239 |
Q |
| |
|
|||||||||||||||||| | ||||||| |||| |||| |||||| |||||||||||||| |||| |
|
|
| T |
20759427 |
ttcatttgcacattgattaatcaaggcttgttatttatagatgttacaattccacaaacaccatcttt |
20759360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 20189113 - 20189217
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
234 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
20189113 |
aagttggtggctaatcaatgcatgaggaggttatatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacca |
20189212 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
|
||||| |
|
|
| T |
20189213 |
ccttt |
20189217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 20190746 - 20190850
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
234 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| |
|
|
| T |
20190746 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatttcaagacgttacaattccacaaacacca |
20190845 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
|
||||| |
|
|
| T |
20190846 |
ccttt |
20190850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 24157370 - 24157473
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
234 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
24157370 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgca-attgatttgtgaaggcttattatttctagacgttacaattccacaaacacca |
24157468 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
|
||||| |
|
|
| T |
24157469 |
ccttt |
24157473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 36233673 - 36233575
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacc |
233 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
36233673 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc |
36233575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 40554385 - 40554285
Alignment:
| Q |
2 |
ttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagttat |
101 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||| | ||||||||| ||||||||| ||| || |||| || |||||||||| ||||||| |||| |
|
|
| T |
40554385 |
ttcattattttcgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaagattaatgaaataactcttatgtggctaattat |
40554286 |
T |
|
| Q |
102 |
t |
102 |
Q |
| |
|
| |
|
|
| T |
40554285 |
t |
40554285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0269 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0269
Description:
Target: scaffold0269; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 1719 - 1823
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
234 |
Q |
| |
|
||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
1719 |
aagttagtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaagcttattatttctagacgttacaattccacaaacacca |
1818 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
|
||||| |
|
|
| T |
1819 |
ccttt |
1823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 244757 - 244855
Alignment:
| Q |
135 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacc |
233 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
244757 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc |
244855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 29949948 - 29949854
Alignment:
| Q |
139 |
tggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacc |
233 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
29949948 |
tggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc |
29949854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 29951586 - 29951492
Alignment:
| Q |
139 |
tggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacc |
233 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
29951586 |
tggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc |
29951492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 13069 - 13170
Alignment:
| Q |
1 |
cttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagtta |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||||||| | ||| ||||| ||||||||| ||| ||| |||| || |||||||||| ||||||| ||| |
|
|
| T |
13069 |
cttcattattttcgccccctttatataggtaataggctagaatgttgaaaagcttacaattatatcatgattaatgaaataactcttatgtggctaatta |
13168 |
T |
|
| Q |
101 |
tt |
102 |
Q |
| |
|
|| |
|
|
| T |
13169 |
tt |
13170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 5734 - 5634
Alignment:
| Q |
2 |
ttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagttat |
101 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||| | ||||||||| ||||||||| ||| || |||| || |||||||||| ||||||| |||| |
|
|
| T |
5734 |
ttcattattttcgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaagattaatgaaataactcttatgtggctaattat |
5635 |
T |
|
| Q |
102 |
t |
102 |
Q |
| |
|
| |
|
|
| T |
5634 |
t |
5634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0139 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0139
Description:
Target: scaffold0139; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 6403 - 6303
Alignment:
| Q |
2 |
ttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagttat |
101 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||| | ||||||||| ||||||| | ||| || |||| || |||||||||| ||||||| |||| |
|
|
| T |
6403 |
ttcattattttcgccccctttatataggtaataggctagaatgctgaaaagcttacagttatatcaagattaatgaaataactcttatgtggctaattat |
6304 |
T |
|
| Q |
102 |
t |
102 |
Q |
| |
|
| |
|
|
| T |
6303 |
t |
6303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0139; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 4737 - 4637
Alignment:
| Q |
2 |
ttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcttaggtggctagttat |
101 |
Q |
| |
|
|||||| |||||||||||||| |||||| | |||||| | ||||||||| ||||||| | ||| || |||| || |||||||||| ||||||| |||| |
|
|
| T |
4737 |
ttcattattttcgccccctttatataggtactaggctagaatgctgaaaagcttacagttatatcaagattaatgaaataactcttatgtggctaattat |
4638 |
T |
|
| Q |
102 |
t |
102 |
Q |
| |
|
| |
|
|
| T |
4637 |
t |
4637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0180 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 10975 - 11033
Alignment:
| Q |
2 |
ttcattcttttcgccccctttgtataggaaataggcttggatgctgaaatgcttacaat |
60 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||| | ||||||||| ||||||||| |
|
|
| T |
10975 |
ttcattattttcgccccctttatataggtaataggctagaatgctgaaaagcttacaat |
11033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University