View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15862_low_8 (Length: 250)

Name: NF15862_low_8
Description: NF15862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15862_low_8
NF15862_low_8
[»] chr5 (10 HSPs)
chr5 (1-239)||(244884-245122)
chr5 (1-239)||(29949587-29949825)
chr5 (1-239)||(29951225-29951463)
chr5 (128-239)||(38936717-38936828)
chr5 (45-236)||(16780615-16780804)
chr5 (163-239)||(21352695-21352771)
chr5 (175-239)||(21352606-21352670)
chr5 (111-220)||(23660940-23661049)
chr5 (111-220)||(23797521-23797630)
chr5 (65-214)||(258977-259125)
[»] chr4 (16 HSPs)
chr4 (1-239)||(15018086-15018324)
chr4 (1-239)||(15019726-15019964)
chr4 (1-239)||(13518406-13518644)
chr4 (20-239)||(9399084-9399303)
chr4 (1-239)||(39488596-39488834)
chr4 (53-236)||(13517922-13518105)
chr4 (21-239)||(11098499-11098718)
chr4 (21-239)||(42872895-42873112)
chr4 (163-239)||(46690508-46690584)
chr4 (21-239)||(21377201-21377418)
chr4 (151-239)||(18281342-18281429)
chr4 (21-220)||(19457618-19457816)
chr4 (47-229)||(24663911-24664095)
chr4 (42-140)||(30874982-30875080)
chr4 (166-237)||(22473681-22473750)
chr4 (147-218)||(19455904-19455975)
[»] chr1 (11 HSPs)
chr1 (1-239)||(36233308-36233546)
chr1 (1-239)||(24157499-24157737)
chr1 (2-236)||(20189244-20189478)
chr1 (44-239)||(36233845-36234040)
chr1 (1-239)||(20190876-20191114)
chr1 (1-243)||(48462802-48463043)
chr1 (29-241)||(48463831-48464040)
chr1 (7-239)||(20759106-20759328)
chr1 (21-239)||(40553903-40554120)
chr1 (150-239)||(31390149-31390237)
chr1 (150-239)||(40554650-40554738)
[»] chr7 (9 HSPs)
chr7 (1-239)||(9647381-9647619)
chr7 (1-239)||(23446662-23446900)
chr7 (1-239)||(7842676-7842914)
chr7 (1-239)||(40998665-40998903)
chr7 (1-236)||(9595882-9596117)
chr7 (1-236)||(9646845-9647080)
chr7 (1-239)||(41000524-41000763)
chr7 (196-239)||(24790122-24790165)
chr7 (196-239)||(24790156-24790199)
[»] chr2 (10 HSPs)
chr2 (1-239)||(22300342-22300580)
chr2 (1-239)||(18535748-18535986)
chr2 (1-239)||(24806730-24806969)
chr2 (29-239)||(24808614-24808825)
chr2 (96-239)||(31974034-31974177)
chr2 (115-239)||(22299690-22299814)
chr2 (21-239)||(44793275-44793492)
chr2 (178-239)||(24806089-24806151)
chr2 (150-239)||(44792615-44792703)
chr2 (115-144)||(31973965-31973994)
[»] chr8 (8 HSPs)
chr8 (1-239)||(8366107-8366345)
chr8 (1-239)||(17278121-17278358)
chr8 (55-239)||(17277409-17277593)
chr8 (87-239)||(6778187-6778338)
chr8 (21-239)||(17857163-17857380)
chr8 (21-239)||(23016561-23016778)
chr8 (166-239)||(23016372-23016444)
chr8 (196-239)||(17277677-17277720)
[»] chr3 (11 HSPs)
chr3 (1-239)||(5554237-5554475)
chr3 (1-239)||(16346634-16346872)
chr3 (1-239)||(25531636-25531874)
chr3 (1-239)||(47418422-47418660)
chr3 (1-239)||(23460202-23460440)
chr3 (19-239)||(16022616-16022836)
chr3 (1-239)||(5553198-5553436)
chr3 (1-239)||(47566476-47566713)
chr3 (44-204)||(32570515-32570674)
chr3 (63-239)||(2683485-2683660)
chr3 (145-191)||(25532821-25532867)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-239)||(54856-55095)
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-239)||(86583-86817)
scaffold0026 (136-239)||(643-746)
[»] scaffold0018 (1 HSPs)
scaffold0018 (29-239)||(558-769)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-239)||(241046-241284)
[»] scaffold0146 (1 HSPs)
scaffold0146 (68-239)||(31591-31762)
[»] scaffold0096 (1 HSPs)
scaffold0096 (128-239)||(22399-22510)
[»] scaffold0021 (2 HSPs)
scaffold0021 (120-239)||(17657-17776)
scaffold0021 (120-239)||(27188-27307)
[»] scaffold0269 (2 HSPs)
scaffold0269 (1-106)||(1849-1954)
scaffold0269 (148-239)||(1962-2051)
[»] scaffold0094 (1 HSPs)
scaffold0094 (21-239)||(13365-13582)
[»] scaffold0321 (1 HSPs)
scaffold0321 (21-239)||(5220-5437)
[»] scaffold0180 (1 HSPs)
scaffold0180 (21-239)||(11265-11481)
[»] scaffold0139 (1 HSPs)
scaffold0139 (21-239)||(4225-4442)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-239)||(375180-375392)
[»] chr6 (2 HSPs)
chr6 (200-239)||(12037064-12037103)
chr6 (202-239)||(12037016-12037053)
[»] scaffold0359 (1 HSPs)
scaffold0359 (195-239)||(8902-8946)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 244884 - 245122
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  244884 cacgttttcaacttacaactcattttacaccattaaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 244983  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  244984 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 245083  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  245084 aatttggttcttttattccacaatgactttattattctt 245122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29949825 - 29949587
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  29949825 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaacg 29949726  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29949725 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 29949626  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29949625 aatttggttcttttattccacaatgactttattattctt 29949587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29951463 - 29951225
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  29951463 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaacg 29951364  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29951363 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 29951264  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29951263 aatttggttcttttattccacaatgactttattattctt 29951225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 38936828 - 38936717
Alignment:
Q  128 cagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgac 227  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  38936828 cagagctccatatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattgatttggttcttttatttcacaatgac 38936729  T
Q  228 tttattattctt 239  Q
    ||||||||||||    
T  38936728 tttattattctt 38936717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 45 - 236
Target Start/End: Complemental strand, 16780804 - 16780615
Alignment:
Q  45 aatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatag 144  Q
    |||||| |||||||| ||||||| |||||| ||| || ||  |||| ||||||| || | ||||||| |||||| ||||||||||||  ||| |||||||    
T  16780804 aatttgttcttgagttaaacagacgaaatgcagataactttctaagatttccaaggactcaaagatcgcctcaatcggacatccagaattccggatatag 16780705  T
Q  145 ccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattatt 236  Q
    ||||||||||||| ||| ||||||| ||||||||||||||| ||||| ||||||||||||   |||||||||| ||||||||||||||||||    
T  16780704 ccaaaacaagacaaacacatcatgaactacgaaaataaaacattgaa-ccaaaattaattcaattcttttatt-cacaatgactttattatt 16780615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 21352695 - 21352771
Alignment:
Q  163 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  21352695 atcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgactttattattctt 21352771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 21352670 - 21352606
Alignment:
Q  175 gaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  21352670 gaaaataaaactttgaatccaaaattaattaggttcttttattccataatgactttattattctt 21352606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 23661049 - 23660940
Alignment:
Q  111 cacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttc 210  Q
    |||||||| |||||||||| | ||| ||||||  | |||||||||||| ||||| || |||||||||||||| || ||||| ||||||||||||||||||    
T  23661049 cacctcaatcggacatccataactctagatatgacaaaaacaagacagtcatataatcacctacgaaaataatac-ttgaaaccaaaattaatttggttc 23660951  T
Q  211 -ttttattcca 220  Q
     ||||||||||    
T  23660950 attttattcca 23660940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 23797521 - 23797630
Alignment:
Q  111 cacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttc 210  Q
    |||||||| |||||||||| | ||| ||||||  | |||||||||||| ||||| || |||||||||||||| || ||||| ||||||||||||||||||    
T  23797521 cacctcaatcggacatccataactctagatatgacaaaaacaagacagtcatataatcacctacgaaaataatac-ttgaaaccaaaattaatttggttc 23797619  T
Q  211 -ttttattcca 220  Q
     ||||||||||    
T  23797620 attttattcca 23797630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 259125 - 258977
Alignment:
Q  65 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 164  Q
    ||||||| |||||| ||||   ||||||||||  ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||| ||||||||||||  |      
T  259125 agatgaattgtagacaattctctaagctttccgtcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccgaaacaagacagaggtga 259026  T
Q  165 catgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 214  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  259025 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 258977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 15018086 - 15018324
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15018086 cacgttttcaacttacaactcattttacaccattaaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 15018185  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15018186 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 15018285  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15018286 aatttggttcttttattccacaatgactttattattctt 15018324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 15019726 - 15019964
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15019726 cacgttttcaacttacaactcattttacaccattaaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 15019825  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15019826 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 15019925  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15019926 aatttggttcttttattccacaatgactttattattctt 15019964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 13518406 - 13518644
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||    
T  13518406 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagttttccaacg 13518505  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13518506 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 13518605  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13518606 aatttggttcttttattccacaatgactttattattctt 13518644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 9399084 - 9399303
Alignment:
Q  20 tcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaa 119  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9399084 tcattctacaccattaaatattccgaatttgctcttgagtcaaacagacgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaa 9399183  T
Q  120 cggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 219  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9399184 cggacatccagagctccatatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 9399283  T
Q  220 acaatgactttattattctt 239  Q
    ||||||||||||||||||||    
T  9399284 acaatgactttattattctt 9399303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 39488596 - 39488834
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  39488596 cacgttttcaacttacaactcattttaaaccattaaatattctgagtttgctcttgagtcaaacagatgaattgtggagaatttcgtaagctttccaacg 39488695  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39488696 agttaaagatcacctcaaacggacatctagagctccagatatagccaaaataagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 39488795  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||| ||||||||||||||| ||||| ||||||||||||    
T  39488796 aattaggttcttttattccataatgaatttattattctt 39488834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 13517922 - 13518105
Alignment:
Q  53 cttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaaca 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||| ||||||||||||    
T  13517922 cttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacgaacatcggaagctccagacatagccaaaaca 13518021  T
Q  153 agacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattatt 236  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  13518022 agacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactttattatt 13518105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 11098718 - 11098499
Alignment:
Q  21 cattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 119  Q
    ||||||||||||| | |||| |||| |||| |  |||||| |||| |||||||||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  11098718 cattttacaccatgatatatgccgattttgcttatgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 11098620  T
Q  120 cggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaa-tttggttcttttattc 218  Q
    ||||  |||||||||| ||||||    || |||||||||| | || ||||||||||||||||| | |||||||| |||| ||| |||| |||||||||||    
T  11098619 cggagttccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaaataaatttgattcttttattc 11098520  T
Q  219 cacaatgactttattattctt 239  Q
    || ||||| ||||||||||||    
T  11098519 cataatgaatttattattctt 11098499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 42872895 - 42873112
Alignment:
Q  21 cattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 119  Q
    ||||||||||||| | |||| |||| |||| |  | |||| |||| |||||||||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  42872895 cattttacaccatgatatatgccgattttgcttataagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 42872993  T
Q  120 cggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 219  Q
    |||   |||||||||| ||||||    || |||||||| | | || ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||    
T  42872994 cgggattccagagctctagatatgatgaatacaagacatatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattcc 42873092  T
Q  220 acaatgactttattattctt 239  Q
    | ||||| ||||||||||||    
T  42873093 ataatgaatttattattctt 42873112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 46690584 - 46690508
Alignment:
Q  163 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||| ||   ||||||||||| |||||||||||||||| ||||||||||||||||    
T  46690584 atcatgacctacgaaaataaaactttaaatttaaaattaatttagttcttttattccacactgactttattattctt 46690508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 21377418 - 21377201
Alignment:
Q  21 cattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaac 120  Q
    ||||||||||||| | |||| |||| |||| |  |||||| |||| ||||||||||||  |||| |||  ||||||| |   | |||||||||||||| |    
T  21377418 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgattttgtaccctttccatcacttcaaagatcacctcaatc 21377319  T
Q  121 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 220  Q
     ||  | || ||||| ||||||    || | |||||||| | || ||||||||||||||||||| | |||||| ||||| ||||||||||||||||||||    
T  21377318 agagttgcaaagctctagatatgatgaatataagacagatacataatgacctacgaaaataaaaatctgaaccaaaaat-aatttggttcttttattcca 21377220  T
Q  221 caatgactttattattctt 239  Q
     | ||||||||||||||||    
T  21377219 tattgactttattattctt 21377201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 18281342 - 18281429
Alignment:
Q  151 caagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||| | || |||||||||||||||||   |||||||| ||||| |||||| ||||||||||| | ||||||||||||||||||    
T  18281342 caagacagatacataatgacctacgaaaataactatttgaaccaaaaat-aatttgattcttttattcgataatgactttattattctt 18281429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 19457816 - 19457618
Alignment:
Q  21 cattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaac 120  Q
    ||||||||||||  ||||||   |||| ||||||| |||| |||| | ||||| |||  ||| |  |||| |||||||||  ||||||||||||| || |    
T  19457816 cattttacaccaagaaatatgttgaatctgatcttaagtctaacataggaaatttaggaaatattctaagttttccaacgcattaaagatcaccttaatc 19457717  T
Q  121 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttc-ttttattcc 219  Q
     |||||  ||| ||| ||||||| | |||||||||||| ||||| ||  |  |||||||||| |||||||||| |||||||||||||||| |||||||||    
T  19457716 agacattgagaactctagatataacaaaaacaagacagccatat-atcgcaaacgaaaataacactttgaacc-aaaattaatttggttcattttattcc 19457619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 229
Target Start/End: Original strand, 24663911 - 24664095
Alignment:
Q  47 tttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagcc 146  Q
    |||||||||||  | || |||||||||| ||| || ||  ||||||||||||| | ||||||||  | |||| |||||||| | | ||| |||||| | |    
T  24663911 tttgatcttgaccccaaaagatgaaatgcagataaatttctaagctttccaacaaattaaagattgcatcaatcggacatcgacatctctagatatggac 24664010  T
Q  147 aaaacaagacagacatatcatgacc--tacgaaaat-aaaactttgaacccaaaattaatttggttcttttattccacaatgactt 229  Q
    ||||||||||||| |||| |||| |  |||||| || ||||||||||| |||||| |||||||||||| |||| ||| ||| ||||    
T  24664011 aaaacaagacagatatataatgatctatacgaatataaaaactttgaa-ccaaaaataatttggttctcttatgccataataactt 24664095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 30874982 - 30875080
Alignment:
Q  42 ccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagat 140  Q
    ||||||||||||||||||  ||  |||||||||||||   |||  ||| ||||||||||| ||||||||||| | |||| |||||||||||||| ||||    
T  30874982 ccgaatttgatcttgagtttaaatgatgaaatgtagaattttttttaaactttccaacgaattaaagatcacgttaaacagacatccagagctcaagat 30875080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 22473750 - 22473681
Alignment:
Q  166 atgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattc 237  Q
    |||||| |||||||||| | |||||||| ||||  || ||||||||||||||||| ||||||||||||||||    
T  22473750 atgaccaacgaaaataacaatttgaaccaaaaa--aaattggttcttttattccataatgactttattattc 22473681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 19455975 - 19455904
Alignment:
Q  147 aaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttc-ttttattc 218  Q
    ||||||| |||||||||| || |||||| ||||||| |||| ||| |||||||||||||||||| ||||||||    
T  19455975 aaaacaaaacagacatataatcacctacaaaaataacactt-gaaaccaaaattaatttggttcattttattc 19455904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 36233546 - 36233308
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36233546 cacgttttcaacttacaactcattttacaccattaaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 36233447  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36233446 agttaaagatcgcctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 36233347  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36233346 aatttggttcttttattccacaatgactttattattctt 36233308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 24157499 - 24157737
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24157499 cacgttttcaacttacaactcattttaaaccattaaatattccgaattttctcttgagttaaacagatgaaatgtagagaatttcgtaagctttccaacg 24157598  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24157599 agttaaagatcacctcaaacggacatccagagctccagatatagctaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 24157698  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  24157699 aattaggttcttttattccataatgactttattattctt 24157737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 20189244 - 20189478
Alignment:
Q  2 acgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacga 101  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||||||| |    
T  20189244 acgttttcaacttacaactcactttacaccattaaatattccgactttgctcttgagtcaaacagatgaaatgtagagaattttgtaaactttccaacaa 20189343  T
Q  102 gttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatta 201  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20189344 gttgaagatcacctcaaacggacatccagaactccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaaaccaaaatta 20189443  T
Q  202 atttggttcttttattccacaatgactttattatt 236  Q
    |||||||||||||||||||||||||||||||||||    
T  20189444 atttggttcttttattccacaatgactttattatt 20189478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 36233845 - 36234040
Alignment:
Q  44 gaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatata 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36233845 gaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcgcctcaaacggacatccagagctccagatata 36233944  T
Q  144 gccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36233945 gccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 36234040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 20190876 - 20191114
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |    
T  20190876 cacgttttcaacttacaactcattttaaaacattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagataatttagtaagctttccaaag 20190975  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20190976 agttaaagatcacctcaaacggacatccaaagctccagatatagtcaaaacaagacagacatatcatgacatacgaaaataaaactttgaacccaaaatt 20191075  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||| ||||||||||||| | ||||||||||||||||||    
T  20191076 aattaggttcttttattctataatgactttattattctt 20191114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 48463043 - 48462802
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  48463043 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaacg 48462944  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| | ||||||    
T  48462943 agttaaagatcacatcaaacggatatccagagctccaaatatagccaaaacaagacatacatatcatgacctacaaaaataaaactttgaatctaaaatt 48462844  T
Q  201 aatttggttcttttattccacaatgactttattattcttctca 243  Q
    |||||| ||||||| || | |||||||||||||||||||||||    
T  48462843 aatttgattctttt-tttcgcaatgactttattattcttctca 48462802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 48463831 - 48464040
Alignment:
Q  29 accattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatcc 128  Q
    ||||||||| ||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48463831 accattaaaaattccgaatttg--cttgagtcaaacagatgaaatgtaaagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatcc 48463928  T
Q  129 agagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgact 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||| |||    
T  48463929 agagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaa-tttgaacccaaaattattttggttcttttattccacaataact 48464027  T
Q  229 ttattattcttct 241  Q
    |||||||| ||||    
T  48464028 ttattattattct 48464040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 20759328 - 20759106
Alignment:
Q  7 ttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaa 106  Q
    |||||||||||  ||||||||||||||||||||||||||||||| |||| || ||||        ||||||||||||| |||| |||||||  |||| ||    
T  20759328 ttcaacttacagttcattttacaccattaaatattccgaatttgctcttcagacaaa--------atgtagagaattttgtaaactttccatagagtaaa 20759237  T
Q  107 agatcacctcaaacggacatccagagctccagatata--gccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatt 204  Q
    |||| ||||||  |||||||||||| ||||| |||||  |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  20759236 agattacctcactcggacatccagaactccatatatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaa-ccaaaattaatt 20759138  T
Q  205 tggttcttttattccacaatgactttattattctt 239  Q
    ||||||||   || |||||||||||||||||||||    
T  20759137 tggttctt---tttcacaatgactttattattctt 20759106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 40554120 - 40553903
Alignment:
Q  21 cattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 119  Q
    ||||||||||||| | |||| |||| |||| |  |||||| | || |||||||||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  40554120 cattttacaccatgatatatgccgattttgcttctgagtccagcatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 40554022  T
Q  120 cggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 219  Q
    ||||  |||||||||| ||||||    || |||||||||| | || ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||    
T  40554021 cggagttccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattcc 40553923  T
Q  220 acaatgactttattattctt 239  Q
    | ||||| ||||||||||||    
T  40553922 ataatgaatttattattctt 40553903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 31390237 - 31390149
Alignment:
Q  150 acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||| | || ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||||    
T  31390237 acaagacagatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattctt 31390149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 40554650 - 40554738
Alignment:
Q  150 acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||| | || ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||||    
T  40554650 acaagacagatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattctt 40554738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9647381 - 9647619
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||    
T  9647381 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagttttccaacg 9647480  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9647481 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 9647580  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9647581 aatttggttcttttattccacaatgactttattattctt 9647619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 23446900 - 23446662
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||| ||||||| |||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||    
T  23446900 cacgtcttctacttacagctcattctgcaccattaaatattccgaatttgctcttgactcaaacagatgaaatgtagagaatttggtaagctttccaacg 23446801  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23446800 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 23446701  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23446700 aatttggttcttttattccacaatgactttattattctt 23446662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 7842914 - 7842676
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |||||| |||| |||||||||||||||||||||||    
T  7842914 cacgttttctacttacaactcattttaaaccattaaatattccgaatttgcacttgagtcaaacggatgaattgtatagaatttcgtaagctttccaacg 7842815  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  7842814 agttaaagatcacctcaaacggacatccagagctctagatataaccaaaacaaaacagacatatcttgacctacgaaaataaaactttgaacccaaaatt 7842715  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7842714 aatttggttcttttattccacaatgactttattattctt 7842676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 40998665 - 40998903
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||| ||||||| |||||||| ||||||||||||||  ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||    
T  40998665 cacgtcttctacttacagctcattttgcaccattaaatattaagaatttgctcttgaatcaaacagatgaaatgtagagaattttgtaagctttccaacg 40998764  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40998765 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaataagacagacatatcatgacctacgaaaataaaattttgaacccaaaatt 40998864  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40998865 aatttggttcttttattccacaatgactttattattctt 40998903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 9595882 - 9596117
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9595882 cacgttttcaacttacaactcattttaagccattaaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 9595981  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  9595982 agttaaagatcacctcaaacgaacatcgggagctccagacatagccaaaacaagacagacatatcatgatctacgaaaataaaactttgaacccaaagtt 9596081  T
Q  201 aatttggttcttttattccacaatgactttattatt 236  Q
    |||||||||||||||||||||||| |||||||||||    
T  9596082 aatttggttcttttattccacaataactttattatt 9596117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 9646845 - 9647080
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9646845 cacgttttcaacttacaactcattttaagccattaaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 9646944  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||| |||||   ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  9646945 agttaaagatcacctcaaacgaacatcggaagctccagacatagccaaaacaagacagacatatcatgatctacgaaaataaaactttgaacccaaagtt 9647044  T
Q  201 aatttggttcttttattccacaatgactttattatt 236  Q
    |||||||||||||||||||||||| |||||||||||    
T  9647045 aatttggttcttttattccacaataactttattatt 9647080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 41000524 - 41000763
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||| |||||||||||||||| ||||||||||||||  ||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||    
T  41000524 cacgtcttctacttacaactcattttgcaccattaaatattaagaatttgctcttgaatcaaacagatgaaatgtagagaatttcgcaagctttccaacg 41000623  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacg-aaaataaaactttgaacccaaaat 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  41000624 agttagagatcacctcaaacggacatccagagctccagatatagccaaaacaagaccgacatatcatgacctacgaaaaataaaattttgaacccaaaat 41000723  T
Q  200 taatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41000724 taatttggttcttttattccacaatgactttattattctt 41000763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 24790165 - 24790122
Alignment:
Q  196 aaattaatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24790165 aaattaatttggttcttttattccacaatgactttattattctt 24790122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 24790156 - 24790199
Alignment:
Q  196 aaattaatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24790156 aaattaatttggttcttttattccacaatgactttattattctt 24790199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 22300342 - 22300580
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||     
T  22300342 cacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaattccgtaagctttccaaca 22300441  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22300442 agttaaagatcacctcaaacggacatccagagctccggatatagcaaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 22300541  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  22300542 aatttggttcttttattccacaatgaatttattattctt 22300580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 18535748 - 18535986
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||| ||||||| |||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||    
T  18535748 cacgtcttctacttacagctcattctgcaccattaaatattccgaatttgctcttgactcaaacagatgaaatgtagagaattttgtaagctttccaacg 18535847  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18535848 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaatt 18535947  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18535948 aatttggttcttttattccacaatgactttattattctt 18535986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 24806730 - 24806969
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||| ||||||| |||||| | ||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  24806730 cacgtcttctacttacagctcattctgcaccattaaatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaacg 24806829  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24806830 agttaaagatcacctcaaacggacatccggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaatt 24806929  T
Q  201 aatttggttcttttattccacaatgac-tttattattctt 239  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  24806930 aatttggttcttttattccacaatgacttttattattctt 24806969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 29 - 239
Target Start/End: Original strand, 24808614 - 24808825
Alignment:
Q  29 accattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatcc 128  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  24808614 accattaaatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaatgagttaaagatcacctgaaacggacatcc 24808713  T
Q  129 agagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgact 228  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24808714 ggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgact 24808813  T
Q  229 t-tattattctt 239  Q
    | ||||||||||    
T  24808814 tctattattctt 24808825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 31974034 - 31974177
Alignment:
Q  96 caacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaaccca 195  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31974034 caacgagttaaagatcacctcaaacggacatccagaactcccgatatagccaaaacaagacaaacatatcatgacctacgaaaataaaactttgaaccca 31974133  T
Q  196 aaattaatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  31974134 aaattaattaggttcttttattccataatgactttattattctt 31974177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 115 - 239
Target Start/End: Complemental strand, 22299814 - 22299690
Alignment:
Q  115 tcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 214  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22299814 tcaagcggacatccaaagctccagatataggcaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 22299715  T
Q  215 attccacaatgactttattattctt 239  Q
    |||||||||||| ||||||||||||    
T  22299714 attccacaatgaatttattattctt 22299690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 44793275 - 44793492
Alignment:
Q  21 cattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 119  Q
    ||||||||||||| | |||| |||| |||| |  |||||| |||| |||||||||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  44793275 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 44793373  T
Q  120 cggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 219  Q
    ||||  |||||||||| ||||||    || |||||||||| | || ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||    
T  44793374 cggagttccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattcc 44793472  T
Q  220 acaatgactttattattctt 239  Q
    | ||||| ||||||||||||    
T  44793473 ataatgaatttattattctt 44793492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 24806151 - 24806089
Alignment:
Q  178 aataaaactttgaacccaaaattaatttggttcttttattccacaatgac-tttattattctt 239  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  24806151 aataaaacattgaacccaaaattaaattggttcttttattccacaatgacttttattattctt 24806089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 44792703 - 44792615
Alignment:
Q  150 acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||| | || ||||||||| ||||||| | |||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||||    
T  44792703 acaagacagatacataatgacctacaaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattctt 44792615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 31973994 - 31973965
Alignment:
Q  115 tcaaacggacatccagagctccagatatag 144  Q
    ||||||||||||||||||||||||||||||    
T  31973994 tcaaacggacatccagagctccagatatag 31973965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 8366345 - 8366107
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||| ||||    
T  8366345 cacgttttcaacttacaactcattttaaaccgttaaatattccgaatttgctcttgagtcaaatagataaaatgtagagaattccgtaagctttcaaacg 8366246  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8366245 agttaaagatcacctcaaacggacatccagagctccaaatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 8366146  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  8366145 aatttggttcttttattccacaatgaatttattattctt 8366107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 17278121 - 17278358
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||| ||||| | |||||| ||||||| ||||||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||||||| |    
T  17278121 cacgtcttctacttatagctcattctacaccactaaatattccgaatttgcttttgagtcaaacagacgaaatgtagaaaatttcgtaagctttccaatg 17278220  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||    
T  17278221 agttaaagatcacctcaaacggacatctagagctccagatatagccaaaacaagacagacatatcatgacttacgaaaat-aaactttggacccaaaatt 17278319  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17278320 aatttggttcttttattccacaatgactttattattctt 17278358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 17277593 - 17277409
Alignment:
Q  55 tgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaag 154  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17277593 tgagtcaaacagacgaaatgtagagaattccgtaagctttccaatgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaag 17277494  T
Q  155 acagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17277493 acatacatatcatgacctacaaaaataaaactttgaacccaaaattaatttgattcttttattccacaatgactttattattctt 17277409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 239
Target Start/End: Original strand, 6778187 - 6778338
Alignment:
Q  87 taagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaact 186  Q
    ||||||||| || || | ||||| |||||||  || | || |||||||||| |||||||||||||||||||||||||||||||| |  | ||||||||||    
T  6778187 taagctttctaaagactcaaagaacacctcactcgaatattcagagctccaaatatagccaaaacaagacagacatatcatgacatgtgtaaataaaact 6778286  T
Q  187 ttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    | ||| |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  6778287 tagaa-ccaaaattaattcggttcttttattccacaataactttattattctt 6778338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 17857380 - 17857163
Alignment:
Q  21 cattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 119  Q
    ||||||||||||| | |||| |||| |||| |  |||||| |||| |||||||||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  17857380 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 17857282  T
Q  120 cggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 219  Q
    ||||  |||||||||| ||||||    || |||||||||| | || ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||    
T  17857281 cggagttccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattcc 17857183  T
Q  220 acaatgactttattattctt 239  Q
    | ||||| ||||||||||||    
T  17857182 ataatgaatttattattctt 17857163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 23016561 - 23016778
Alignment:
Q  21 cattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 119  Q
    ||||||||||||| | |||| |||| |||| |  |||||| |||| |||||||||||| |||||| |||  ||||||||||  | ||| ||||||||||     
T  23016561 cattttacaccatgatatatgccgattttgcttatgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaatatcacctcaat 23016659  T
Q  120 cggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 219  Q
     |||  | |||| ||| ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||| ||||||| || |||||||||    
T  23016660 tggagttgcagaactctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaaaataatttgatttttttattcc 23016758  T
Q  220 acaatgactttattattctt 239  Q
    | || ||||||| |||||||    
T  23016759 ataacgactttaatattctt 23016778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 23016372 - 23016444
Alignment:
Q  166 atgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||| |||||||||| |||||||    
T  23016372 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgactttaatattctt 23016444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 17277720 - 17277677
Alignment:
Q  196 aaattaatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  17277720 aaattaatttggttcttttattccataatgactttattattctt 17277677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5554237 - 5554475
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||| ||||||| |||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||    
T  5554237 cacgtcttctacttacagctcattctgcaccattaaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctatccaacg 5554336  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5554337 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaatt 5554436  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5554437 aatttggttcttttattccacaatgactttattattctt 5554475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 16346872 - 16346634
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||| ||||||| |||||| | ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16346872 cacgtcttctacttacagctcattctgcaccattaaatattctgaatttgctcttgactcaaacagatgaaatgtagagaatttcgtaagctttccaacg 16346773  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16346772 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaatt 16346673  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16346672 aatttggttcttttattccacaatgactttattattctt 16346634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 25531874 - 25531636
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||    
T  25531874 cacgttttcaacttacaactcattttaaaccattaaatattctgaatttgctcttaagtcaaacagatgaaatgtagagaattccataagctttccaacg 25531775  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25531774 agttaaagatcacctcaaacggacatccagagctccagatatagtcaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 25531675  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||| ||| ||||||| ||||||||||||    
T  25531674 aatttggttctttttttctacaatgaatttattattctt 25531636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 47418422 - 47418660
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||| ||||||| |||||| | ||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||    
T  47418422 cacgtcttctacttacagctcattctgcaccattaaatattctgaatttgctcttgactcaaacagatgaaatgtagagaattttgtaagctttccaacg 47418521  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47418522 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaatt 47418621  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47418622 aatttggttcttttattccacaatgactttattattctt 47418660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 23460440 - 23460202
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||| || |||| |||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23460440 cacgtcttctacctacagctcattctgcaccattaaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacg 23460341  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23460340 agttaaagatcacctcaaacggatatccagagctccagatatagccaaaacaagacagacatataatgacctacgaaaataaaactttgaacccaaaatt 23460241  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  23460240 aatttggttcttttattctacaatgactttattattctt 23460202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 16022616 - 16022836
Alignment:
Q  19 ctcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 118  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  16022616 ctcattctacaccactaaatattccgaatttgatcttgagtcaaacagacgaaatgtagagaacttcgtaagctttccaacgagttaaagaccacctcaa 16022715  T
Q  119 acggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattc 218  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16022716 acggacatccagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttggacccaaaattaatttggttcttttattc 16022815  T
Q  219 cacaatgactttattattctt 239  Q
    |||||||||||||||||||||    
T  16022816 cacaatgactttattattctt 16022836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5553436 - 5553198
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||| ||||||| |||||| | |||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  5553436 cacgtcttctacttacagctcattctgcaccattaaatatttcgaatttgctcttgaattaaacagatgaaatgtagagaatttcgtaagctttccaacg 5553337  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  5553336 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaataaaattttgaacccaaaatt 5553237  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  5553236 aatttggttcttttatttcacaatgactttattattctt 5553198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 47566713 - 47566476
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||||||||||| |||||| ||||||||||||||||  ||||||| ||  |||||||||||| |||||||| ||||||| |||||||||||||||    
T  47566713 cacgtcttcaacttacagctcattctacaccattaaatattttgaatttgctc--gagtcaaacagacgaaatgtaaagaattttgtaagctttccaacg 47566616  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagac--atatcatgacctacgaaaataaaactttgaacccaaaa 198  Q
    | |||||||||||||||| || ||||||| |||||||||||||||||| |||||||| ||  ||||||||| |||||||||||||| ||| ||  |||||    
T  47566615 aattaaagatcacctcaatcgaacatccatagctccagatatagccaagacaagacaaacatatatcatgatctacgaaaataaaa-ttttaaatcaaaa 47566517  T
Q  199 ttaatttggttcttttattccacaatgactttattattctt 239  Q
    |||| |   ||||||||||||||||||||||||||||||||    
T  47566516 ttaaatcaattcttttattccacaatgactttattattctt 47566476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 32570674 - 32570515
Alignment:
Q  44 gaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatata 143  Q
    ||||||| ||| |||||||||| |  ||||||||| ||||| |||||||||||||||| ||||||||||||||||    ||||||||| |||||||||||    
T  32570674 gaatttgctctcgagtcaaacatacaaaatgtagataattttgtaagctttccaacgaattaaagatcacctcaatataacatccagaactccagatata 32570575  T
Q  144 gccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatt 204  Q
    |  ||||||| | |||||||| |||| |||||||||||| | || ||| ||||||||||||    
T  32570574 gtaaaaacaaaatagacatataatgatctacgaaaataacatttagaa-ccaaaattaatt 32570515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 239
Target Start/End: Complemental strand, 2683660 - 2683485
Alignment:
Q  63 acagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacat 162  Q
    ||||| ||||| |||| ||||| |||| | || |||||| ||||||||||  | || ||||||| || ||  | ||||||||  |||| |||||||||||    
T  2683660 acagacgaaatatagataattttgtaatcatttcaacgaattaaagatcatttgaatcggacattcaaagtcctagatatagataaaataagacagacat 2683561  T
Q  163 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
     | |||| |||| ||||||| |||||||||  |||||||||||| || |||||||||| ||||| ||||||||||||    
T  2683560 gttatgatctacaaaaataacactttgaaca-aaaattaatttgatttttttattccaaaatgattttattattctt 2683485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 25532821 - 25532867
Alignment:
Q  145 ccaaaacaagacagacatatcatgacctacgaaaataaaactttgaa 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25532821 ccaaaacaagacagacatatcatgacctacgaaaataaaactttgaa 25532867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 55095 - 54856
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||| ||||||| |||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||    
T  55095 cacgtcttctacttacagctcattctgcaccattaaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaattttgtaagctttccaacg 54996  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54995 agttaaagatcacctcaaacggacatccagagctccagatatagcgaaaacaagacagacatagcatgacctacgaaaataaaactttgaacccaaaatt 54896  T
Q  201 aatttggttcttttattccacaatgac-tttattattctt 239  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  54895 aatttggttcttttattccacaatgacttttattattctt 54856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 86817 - 86583
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  86817 cacgttttcagcttacaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaaatttagagaatttcgtaagctttcaaacg 86718  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||||||    ||| |||||||||||||| |||||||||| ||||||||||||||    
T  86717 agttaaagatcacctcaaacggacatcaggagctccatatatagccaaaaca----agagatatcatgacctacaaaaataaaacattgaacccaaaatt 86622  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  86621 aatttggttcctttattccacaatgactttattattctt 86583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 643 - 746
Alignment:
Q  136 cagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattat 235  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||    
T  643 cagatatagccaaaacaagatagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttatttctcaatgactttattat 742  T
Q  236 tctt 239  Q
    ||||    
T  743 tctt 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 29 - 239
Target Start/End: Original strand, 558 - 769
Alignment:
Q  29 accattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatcc 128  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  558 accattaaatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaatgagttaaagatcacctgaaacggacatcc 657  T
Q  129 agagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgact 228  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  658 ggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgact 757  T
Q  229 t-tattattctt 239  Q
    | ||||||||||    
T  758 tctattattctt 769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 241284 - 241046
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||| ||| ||||| | |||||| ||||||| ||||||||||||||||| || ||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  241284 cacgtcttctacttatagctcattctacaccactaaatattccgaatttgctcctgagtcaaaaagacgaaatgtagagaacttcgtaagctttccaacg 241185  T
Q  101 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaatt 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  241184 agttaaagatcacctcaaacggacatccagagcttcagatatagccaaaacaagacagacatattatgacctacgaaaataaaactttaaacccaaaatt 241085  T
Q  201 aatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  241084 aatttggttcttttattctgcaatgactttattattctt 241046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 68 - 239
Target Start/End: Complemental strand, 31762 - 31591
Alignment:
Q  68 tgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcat 167  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31762 tgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcat 31663  T
Q  168 gacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31662 gacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 31591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 22510 - 22399
Alignment:
Q  128 cagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22510 cagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgac 22411  T
Q  228 tttattattctt 239  Q
    ||||||||||||    
T  22410 tttattattctt 22399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 17776 - 17657
Alignment:
Q  120 cggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 219  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17776 cggacatccagagctccagatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattca 17677  T
Q  220 acaatgactttattattctt 239  Q
    ||| ||||||||||||||||    
T  17676 acactgactttattattctt 17657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 27307 - 27188
Alignment:
Q  120 cggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 219  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27307 cggacatccagagctccagatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattca 27208  T
Q  220 acaatgactttattattctt 239  Q
    ||| ||||||||||||||||    
T  27207 acactgactttattattctt 27188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 1849 - 1954
Alignment:
Q  1 cacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacg 100  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  1849 cacgttttcaaattacaactcattttaaaccattaaatattccgaatttgctcttgagtcagacagatgaaatgtagagaattccataagctttccaacg 1948  T
Q  101 agttaa 106  Q
    ||||||    
T  1949 agttaa 1954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 1962 - 2051
Alignment:
Q  148 aaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1962 aaacaagacaga--tatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacattattattctt 2051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 13365 - 13582
Alignment:
Q  21 cattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 119  Q
    ||||||||||||| | |||| |||| |||| |  |||  | |||| |||||||||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  13365 cattttacaccatgatatatgccgattttgcttctgaacccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 13463  T
Q  120 cggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 219  Q
    ||||  |  ||||||| ||||||    || |||| ||||| | || ||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  13464 cggagttgtagagctctagatatgatgaatacaaaacagatacataatgacctacgaaaataaaaatttgaacccaaaat-aatttggttcttttattcc 13562  T
Q  220 acaatgactttattattctt 239  Q
    | ||||||||||||||||||    
T  13563 ataatgactttattattctt 13582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 5437 - 5220
Alignment:
Q  21 cattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 119  Q
    ||||||||||||| | |||| |||| |||| |  |||||| |||| |||||||||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  5437 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 5339  T
Q  120 cggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 219  Q
    ||||  ||||||| || ||||||    || |||||||| | | || ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||    
T  5338 cggagttccagagttctagatatgatgaatacaagacacatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattcc 5240  T
Q  220 acaatgactttattattctt 239  Q
    | ||||| ||||||||||||    
T  5239 ataatgaatttattattctt 5220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 11265 - 11481
Alignment:
Q  21 cattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 119  Q
    ||||||||||||| | |||| |||| |||| |  |||||| |||| |||||||||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  11265 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 11363  T
Q  120 cggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 219  Q
    ||||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||| ||||||| ||||||||||||    
T  11364 cggagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaaaataatttgattcttttattcc 11462  T
Q  220 acaatgactttattattctt 239  Q
    | |||||||||| |||||||    
T  11463 a-aatgactttaatattctt 11481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 4442 - 4225
Alignment:
Q  21 cattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 119  Q
    ||||||||||||| | || | |||| |||| |  ||||||||||| |||||||||||| |||||| |||  ||||| ||||  ||||||||||||||||     
T  4442 cattttacaccatgatatctgccgattttgcttctgagtcaaacatatgaaatgtagatgaattt-gtaccctttcgaacgctttaaagatcacctcaat 4344  T
Q  120 cggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 219  Q
    ||||  |  ||||||| | ||||    || |||| ||||| | || ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||    
T  4343 cggagttgtagagctctaaatatgatgaatacaatacagatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattcc 4245  T
Q  220 acaatgactttattattctt 239  Q
    | ||||||||||||||||||    
T  4244 ataatgactttattattctt 4225  T

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Target: scaffold0002 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 375180 - 375392
Alignment:
Q  21 cattttacaccattaaatattccgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaac 120  Q
    ||||||||||||| | |||| |||| |||| |  |||||| |||| ||||||||||    |||| |||  ||||||||||  | |||||||||||||| |    
T  375180 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgta----attt-gtaccctttccaacgcttcaaagatcacctcaatc 375274  T
Q  121 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 220  Q
     ||  |||||||||| ||||||    || |||||||||| | || ||||||||| ||||||| | |||||||| ||||| |||||| |||||||||||||    
T  375275 agagttccagagctctagatatgaggaatacaagacagatacataatgacctacaaaaataacaatttgaaccaaaaat-aatttgattcttttattcca 375373  T
Q  221 caatgactttattattctt 239  Q
     ||||| ||||||||||||    
T  375374 taatgaatttattattctt 375392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 12037064 - 12037103
Alignment:
Q  200 taatttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12037064 taatttggttcttttattccacaatgactttattattctt 12037103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 12037053 - 12037016
Alignment:
Q  202 atttggttcttttattccacaatgactttattattctt 239  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12037053 atttggttcttttattccacaatgactttattattctt 12037016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 8902 - 8946
Alignment:
Q  195 aaaattaatttggttcttttattccacaatgactttattattctt 239  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  8902 aaaattaacttggttcttatattccacaatgactttattattctt 8946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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