View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15863_high_1 (Length: 751)

Name: NF15863_high_1
Description: NF15863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15863_high_1
NF15863_high_1
[»] chr7 (14 HSPs)
chr7 (18-322)||(24045660-24045965)
chr7 (340-696)||(24044772-24045130)
chr7 (337-398)||(9107345-9107406)
chr7 (660-704)||(19426579-19426623)
chr7 (436-472)||(24044726-24044762)
chr7 (664-704)||(33223557-33223597)
chr7 (661-697)||(41080126-41080162)
chr7 (339-377)||(36449298-36449336)
chr7 (660-697)||(4971289-4971326)
chr7 (660-697)||(12141898-12141935)
chr7 (660-697)||(24700120-24700157)
chr7 (660-697)||(27164872-27164909)
chr7 (660-697)||(37856189-37856226)
chr7 (660-697)||(41985124-41985161)
[»] scaffold1613 (1 HSPs)
scaffold1613 (342-398)||(857-913)
[»] chr1 (13 HSPs)
chr1 (342-398)||(38544578-38544634)
chr1 (339-398)||(38548896-38548955)
chr1 (660-697)||(50797790-50797827)
chr1 (661-697)||(16836139-16836175)
chr1 (660-699)||(40612113-40612152)
chr1 (662-697)||(52714979-52715014)
chr1 (660-694)||(44517988-44518022)
chr1 (660-697)||(1690445-1690482)
chr1 (660-697)||(9011644-9011681)
chr1 (660-697)||(19442505-19442542)
chr1 (660-697)||(27687543-27687580)
chr1 (660-697)||(40596078-40596115)
chr1 (660-697)||(42256459-42256496)
[»] chr4 (17 HSPs)
chr4 (339-398)||(12296360-12296419)
chr4 (660-704)||(9162065-9162109)
chr4 (661-704)||(169530-169573)
chr4 (661-704)||(15596396-15596439)
chr4 (661-700)||(30042134-30042173)
chr4 (661-704)||(39010165-39010208)
chr4 (660-702)||(51717312-51717354)
chr4 (660-697)||(3222988-3223025)
chr4 (660-697)||(15638160-15638197)
chr4 (660-697)||(23094375-23094412)
chr4 (660-697)||(31221412-31221449)
chr4 (660-697)||(38864771-38864808)
chr4 (660-697)||(41262653-41262690)
chr4 (660-697)||(44368237-44368274)
chr4 (660-689)||(48783809-48783838)
chr4 (660-697)||(51359825-51359862)
chr4 (660-697)||(54036553-54036590)
[»] chr6 (6 HSPs)
chr6 (660-704)||(15722531-15722575)
chr6 (660-704)||(30714679-30714723)
chr6 (341-375)||(34101392-34101426)
chr6 (660-697)||(3180027-3180064)
chr6 (660-697)||(3339534-3339571)
chr6 (660-697)||(30945822-30945859)
[»] chr8 (11 HSPs)
chr8 (661-704)||(7596919-7596962)
chr8 (661-704)||(21273738-21273781)
chr8 (660-697)||(36064029-36064066)
chr8 (660-704)||(11223887-11223931)
chr8 (660-704)||(22852867-22852911)
chr8 (662-697)||(6806909-6806944)
chr8 (669-700)||(24319348-24319379)
chr8 (664-697)||(14710917-14710950)
chr8 (660-697)||(17775464-17775501)
chr8 (660-697)||(40413373-40413410)
chr8 (660-697)||(42443103-42443140)
[»] chr5 (10 HSPs)
chr5 (339-377)||(17853891-17853929)
chr5 (660-704)||(26660439-26660483)
chr5 (660-704)||(26932031-26932075)
chr5 (661-697)||(27440479-27440515)
chr5 (660-704)||(36713206-36713250)
chr5 (661-704)||(19127124-19127167)
chr5 (655-704)||(3771034-3771083)
chr5 (660-697)||(3960204-3960241)
chr5 (660-697)||(14914371-14914408)
chr5 (661-702)||(42699057-42699098)
[»] chr2 (6 HSPs)
chr2 (339-377)||(27879973-27880011)
chr2 (660-697)||(22353199-22353236)
chr2 (339-398)||(20572273-20572331)
chr2 (660-697)||(27307266-27307303)
chr2 (660-697)||(29795446-29795483)
chr2 (660-697)||(36909878-36909915)
[»] scaffold0592 (1 HSPs)
scaffold0592 (660-700)||(8339-8379)
[»] chr3 (15 HSPs)
chr3 (660-704)||(48945846-48945890)
chr3 (660-704)||(55344324-55344368)
chr3 (660-699)||(3958051-3958090)
chr3 (661-704)||(20380917-20380960)
chr3 (662-704)||(31206879-31206921)
chr3 (660-697)||(7249-7286)
chr3 (660-697)||(1765403-1765440)
chr3 (660-697)||(8254026-8254063)
chr3 (660-697)||(34021498-34021535)
chr3 (660-697)||(35074125-35074162)
chr3 (660-697)||(43169777-43169814)
chr3 (660-697)||(47683800-47683837)
chr3 (660-697)||(48405409-48405446)
chr3 (660-697)||(49196695-49196732)
chr3 (660-697)||(52454129-52454166)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 24045965 - 24045660
Alignment:
Q  18 gttgctgctgccattgcaaccatttttgttgaaatttgcactagtgtgtttctaggggtgaatgagttgcatggatggattgtgttgtaaggtactgaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24045965 gttgctgctgccattgcaaccatttttgttgaaatttgcactagtgtgtttctagtggtgaatgagttgcatggatggattgtgttgtaaggtactgaag 24045866  T
Q  118 gaaaagagattgtaaggttcgtaatggtttgtgatactattggtcccacttatcttcttcatatcattttgc-tttgtgattgtggattccaatggttct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24045865 gaaaagagattgtaaggttcgtaatggtttgtgatactattggtcccacttatcttcttcatatcattttgcttttgtgattgtggattccaatggttct 24045766  T
Q  217 gttttgccacggtggannnnnnnnnnnnnnnnncttgaatgaaaaggtagtcttaacaattttaaaactaatttatgcctttttaagtattattgcgtag 316  Q
    ||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24045765 gttttgccacggtggattttttgtctgttttttcttgaatgaaaaggtagtcttaacaattttaaaactaatttatgcctttttaagtattattgtgtag 24045666  T
Q  317 gtcctt 322  Q
    ||||||    
T  24045665 gtcctt 24045660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 340 - 696
Target Start/End: Complemental strand, 24045130 - 24044772
Alignment:
Q  340 gaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctctatattagtccctcaactatataccagagactaaattaatctt 439  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24045130 gaaaaacgatatccataaccactcatcatcactacgcatctcaacgtaacacccctctatattagtccctcaactatataccagagactaaattagtctt 24045031  T
Q  440 ccaaataaaaatgttaaggactgatttgagtattg-nnnnnnngttaaagactacattaaattttgagacaaaattgtgtctctactcttattattttga 538  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24045030 ccaaataaaaatgttaaggactgatttgagtattgttttttttgttaaagactacattaaattttgagacaaaattgtgtctctactcttattattttga 24044931  T
Q  539 gtataaaattaaagatga--ctctaatnnnnnnngatattgtttaaaacataaatatgcttttaaacacccaaaagtttataaatttatccctttgnnnn 636  Q
    ||||| ||||||||||||  |||||||       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||        
T  24044930 gtatacaattaaagatgactctctaataaaaaaagatattgtttaaaacataaatatgcttttaaacaccgaaaagtttataaatttatccctttg-ttt 24044832  T
Q  637 nnnagagaaacttagctgagttcagagaaatcatatttgtacaatcattttgtgacaact 696  Q
       ||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||    
T  24044831 tttagagaaacttagctgagtttatagaaatgatatttgtacaattattttgtgacaact 24044772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 9107406 - 9107345
Alignment:
Q  337 attgaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 398  Q
    |||| |||||||||||||||||||| |||| |||||||||||| |||  |||| ||||||||    
T  9107406 attggaaaacgatatccataaccacccatcgccactactcatcccaaaataactcccctcta 9107345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 704
Target Start/End: Original strand, 19426579 - 19426623
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||    
T  19426579 agagaaatgatatttgtacaaccattttgtgacaactttttgaca 19426623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 472
Target Start/End: Original strand, 24044726 - 24044762
Alignment:
Q  436 tcttccaaataaaaatgttaaggactgatttgagtat 472  Q
    ||||||||||||||||||||||||||||| |||||||    
T  24044726 tcttccaaataaaaatgttaaggactgatgtgagtat 24044762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 664 - 704
Target Start/End: Complemental strand, 33223597 - 33223557
Alignment:
Q  664 aaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  33223597 aaatgatatttgtacaaccattttgtgacaacttcttgaca 33223557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 661 - 697
Target Start/End: Original strand, 41080126 - 41080162
Alignment:
Q  661 gagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    ||||||| |||||||||||||||||||||||||||||    
T  41080126 gagaaatgatatttgtacaatcattttgtgacaactt 41080162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 339 - 377
Target Start/End: Complemental strand, 36449336 - 36449298
Alignment:
Q  339 tgaaaaacgatatccataaccactcatcaccactactca 377  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  36449336 tgaaaaacgatatccataaccactcatcgtcactactca 36449298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 4971289 - 4971326
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  4971289 agagaaatgatatttgtacaaccattttgtgacaactt 4971326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 12141898 - 12141935
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  12141898 agagaaatcatatttgtacaaccattttgtgataactt 12141935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 24700120 - 24700157
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  24700120 agagaaatgatatttgtacaatcattttgtaacaactt 24700157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 27164909 - 27164872
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  27164909 agagaaatgatatttgtacaatcaatttgtgacaactt 27164872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 37856226 - 37856189
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  37856226 agagaaatgatatttgtacaaccattttgtgacaactt 37856189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 41985161 - 41985124
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  41985161 agagaaatgatatttgtacaatcaatttgtgacaactt 41985124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 857 - 913
Alignment:
Q  342 aaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 398  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  857 aaaacgatatccataaccactcatcgtcactactcatcccaacgtaacacccctcta 913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 38544578 - 38544634
Alignment:
Q  342 aaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 398  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  38544578 aaaacgatatccataaccactcatcgtcactactcatcccaacgtaacacccctcta 38544634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 38548896 - 38548955
Alignment:
Q  339 tgaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 398  Q
    ||||||||||||| ||||||||| ||||  ||||||||||| ||| ||||||||||||||    
T  38548896 tgaaaaacgatattcataaccacccatcgtcactactcatcccaaagtaacacccctcta 38548955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 50797790 - 50797827
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||||||||||||||||||||    
T  50797790 agagaaatgatatttgtacaatcattttgtgacaactt 50797827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 661 - 697
Target Start/End: Complemental strand, 16836175 - 16836139
Alignment:
Q  661 gagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    ||||||| |||||||||||||||||||||||||||||    
T  16836175 gagaaatgatatttgtacaatcattttgtgacaactt 16836139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 699
Target Start/End: Original strand, 40612113 - 40612152
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttct 699  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  40612113 agagaaatgatatttgtacaaccattttgtgacaacttct 40612152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 697
Target Start/End: Original strand, 52714979 - 52715014
Alignment:
Q  662 agaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||| |||||||||||||||||||||||||||||    
T  52714979 agaaatgatatttgtacaatcattttgtgacaactt 52715014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 694
Target Start/End: Complemental strand, 44518022 - 44517988
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaa 694  Q
    |||||||||||||||||| ||||||||||||||||    
T  44518022 agagaaatcatatttgtataatcattttgtgacaa 44517988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 1690445 - 1690482
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  1690445 agagaaataatatttgtacaaccattttgtgacaactt 1690482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 9011644 - 9011681
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  9011644 agagaaatgatatttgtacaaccattttgtgacaactt 9011681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 19442505 - 19442542
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  19442505 agagaaatgatatttgaacaatcattttgtgacaactt 19442542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 27687580 - 27687543
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  27687580 agagaaatgatatttgtacaaccattttgtgacaactt 27687543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 40596115 - 40596078
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  40596115 agagaaatgatatttgtacaaccattttgtgacaactt 40596078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 42256459 - 42256496
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  42256459 agagaaatgatatttgtacaaccattttgtgacaactt 42256496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 339 - 398
Target Start/End: Complemental strand, 12296419 - 12296360
Alignment:
Q  339 tgaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 398  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||  |||||||||||||    
T  12296419 tgaaaaacgatatccataaccacccatcgccactactcatcccaaaataacacccctcta 12296360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 660 - 704
Target Start/End: Original strand, 9162065 - 9162109
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||    
T  9162065 agagaaatgatatttgtacaatcattttgtgacaactttttgaca 9162109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 704
Target Start/End: Complemental strand, 169573 - 169530
Alignment:
Q  661 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||    
T  169573 gagaaatgatatttgtacaaccattttgtgacaactttttgaca 169530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 704
Target Start/End: Original strand, 15596396 - 15596439
Alignment:
Q  661 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    ||||||| |||||||||||| || ||||||||||||||||||||    
T  15596396 gagaaatgatatttgtacaaccactttgtgacaacttcttgaca 15596439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 700
Target Start/End: Original strand, 30042134 - 30042173
Alignment:
Q  661 gagaaatcatatttgtacaatcattttgtgacaacttctt 700  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  30042134 gagaaatgatatttgtacaaccattttgtgacaacttctt 30042173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 704
Target Start/End: Complemental strand, 39010208 - 39010165
Alignment:
Q  661 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||    
T  39010208 gagaaatgatatttgtacaaccattttgtgacaactttttgaca 39010165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 702
Target Start/End: Complemental strand, 51717354 - 51717312
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttcttga 702  Q
    |||||||| |||||||||||| || ||||||||||||||||||    
T  51717354 agagaaatgatatttgtacaaccaatttgtgacaacttcttga 51717312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 3222988 - 3223025
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  3222988 agagaaatgatatttgtacaatcaatttgtgacaactt 3223025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 15638160 - 15638197
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  15638160 agagaaatgatatttgtacaatcattttttgacaactt 15638197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 23094375 - 23094412
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  23094375 agagaaatgatatttgtacaatcattttgtgataactt 23094412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 31221412 - 31221449
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  31221412 agagaaatgatatttgtacaatcaatttgtgacaactt 31221449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 38864808 - 38864771
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  38864808 agagaaatgatatttgtacaattattttgtgacaactt 38864771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 41262690 - 41262653
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  41262690 agagaaatgatatttgtacaattattttgtgacaactt 41262653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 44368274 - 44368237
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  44368274 agagaaatgatatttgtacaatcaatttgtgacaactt 44368237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 689
Target Start/End: Original strand, 48783809 - 48783838
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgt 689  Q
    ||||||||||||||||||||||||||||||    
T  48783809 agagaaatcatatttgtacaatcattttgt 48783838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 51359862 - 51359825
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  51359862 agagaaatgatatttgtacaaccattttgtgacaactt 51359825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 54036590 - 54036553
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  54036590 agagaaatgatatttgtacaaccattttgtgacaactt 54036553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 660 - 704
Target Start/End: Complemental strand, 15722575 - 15722531
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||    
T  15722575 agagaaatgatatttgtacaatcattttgtgacaactttttgaca 15722531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 704
Target Start/End: Original strand, 30714679 - 30714723
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||||||| ||||||||||||||||||||||||| ||| ||||||    
T  30714679 agagaaatgatatttgtacaatcattttgtgacagctttttgaca 30714723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 375
Target Start/End: Complemental strand, 34101426 - 34101392
Alignment:
Q  341 aaaaacgatatccataaccactcatcaccactact 375  Q
    |||||||||||||||||||||||||| ||||||||    
T  34101426 aaaaacgatatccataaccactcatcgccactact 34101392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 3180064 - 3180027
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  3180064 agagaaatgatatttgtacaatcattttttgacaactt 3180027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 3339571 - 3339534
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  3339571 agagaaatgatatttgtacaaccattttgtgacaactt 3339534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 30945822 - 30945859
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  30945822 agagaaatgatatttatacaatcattttgtgacaactt 30945859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 661 - 704
Target Start/End: Complemental strand, 7596962 - 7596919
Alignment:
Q  661 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||    
T  7596962 gagaaatgatatttgtacaatcactttgtgacaacttcttgaca 7596919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 661 - 704
Target Start/End: Complemental strand, 21273781 - 21273738
Alignment:
Q  661 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    ||||||| |||||||||||| |||||||||||||||||||||||    
T  21273781 gagaaatgatatttgtacaaccattttgtgacaacttcttgaca 21273738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 36064029 - 36064066
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||||||||||||||||||||    
T  36064029 agagaaatgatatttgtacaatcattttgtgacaactt 36064066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 704
Target Start/End: Complemental strand, 11223931 - 11223887
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||||||| |||||||||||  |||||||||||||||||||||||    
T  11223931 agagaaatgatatttgtacatccattttgtgacaacttcttgaca 11223887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 704
Target Start/End: Complemental strand, 22852911 - 22852867
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  22852911 agagaaatgatatttgtacaaccactttgtgacaacttcttgaca 22852867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 697
Target Start/End: Original strand, 6806909 - 6806944
Alignment:
Q  662 agaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||| |||||||||||||||||||||||||||||    
T  6806909 agaaatgatatttgtacaatcattttgtgacaactt 6806944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 700
Target Start/End: Original strand, 24319348 - 24319379
Alignment:
Q  669 atatttgtacaatcattttgtgacaacttctt 700  Q
    ||||||||||||||||||||||||||||||||    
T  24319348 atatttgtacaatcattttgtgacaacttctt 24319379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 697
Target Start/End: Complemental strand, 14710950 - 14710917
Alignment:
Q  664 aaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||| |||||||||||||||||||||||||||||    
T  14710950 aaatgatatttgtacaatcattttgtgacaactt 14710917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 17775501 - 17775464
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  17775501 agagaaatgatatttgaacaatcattttgtgacaactt 17775464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 40413410 - 40413373
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  40413410 agagaaatgatatttgtacaattattttgtgacaactt 40413373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 42443103 - 42443140
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  42443103 agagaaatgatatttgtacaatcatttagtgacaactt 42443140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 17853891 - 17853929
Alignment:
Q  339 tgaaaaacgatatccataaccactcatcaccactactca 377  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  17853891 tgaaaaacgatatccataaccacccatcaccactactca 17853929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 704
Target Start/End: Complemental strand, 26660483 - 26660439
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||||||| |||||||||||  |||||||||||||||||||||||    
T  26660483 agagaaatgatatttgtacatccattttgtgacaacttcttgaca 26660439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 704
Target Start/End: Complemental strand, 26932075 - 26932031
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||||||| |||||||||||  |||||||||||||||||||||||    
T  26932075 agagaaatgatatttgtacatccattttgtgacaacttcttgaca 26932031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 661 - 697
Target Start/End: Original strand, 27440479 - 27440515
Alignment:
Q  661 gagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    ||||||| |||||||||||||||||||||||||||||    
T  27440479 gagaaatgatatttgtacaatcattttgtgacaactt 27440515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 704
Target Start/End: Complemental strand, 36713250 - 36713206
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  36713250 agagaaatgatatttgtacaaccactttgtgacaacttcttgaca 36713206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 704
Target Start/End: Original strand, 19127124 - 19127167
Alignment:
Q  661 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    ||||||| |||||||||||| || ||||||||||||||||||||    
T  19127124 gagaaatgatatttgtacaaccactttgtgacaacttcttgaca 19127167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 704
Target Start/End: Complemental strand, 3771083 - 3771034
Alignment:
Q  655 agttcagagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||| |||||||| |||| ||||||| |||||||||||||||| ||||||    
T  3771083 agtttagagaaatgatatctgtacaaccattttgtgacaactttttgaca 3771034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 3960241 - 3960204
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  3960241 agagaaatcatatttgtataatcattttttgacaactt 3960204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 14914371 - 14914408
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  14914371 agagaaatgatatttgtacaaccattttgtgacaactt 14914408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 702
Target Start/End: Original strand, 42699057 - 42699098
Alignment:
Q  661 gagaaatcatatttgtacaatcattttgtgacaacttcttga 702  Q
    ||||||| |||||||||||| |||||||||||||||| ||||    
T  42699057 gagaaatgatatttgtacaaccattttgtgacaactttttga 42699098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 27879973 - 27880011
Alignment:
Q  339 tgaaaaacgatatccataaccactcatcaccactactca 377  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  27879973 tgaaaaacgaaatccataaccactcatcaccactactca 27880011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 22353236 - 22353199
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||||||||||||||||||||    
T  22353236 agagaaatgatatttgtacaatcattttgtgacaactt 22353199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 398
Target Start/End: Complemental strand, 20572331 - 20572273
Alignment:
Q  339 tgaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 398  Q
    ||||||||||||||||||||||| |||| |||||||||| |||||   ||||||||||||    
T  20572331 tgaaaaacgatatccataaccac-catcgccactactcacctcaaaagaacacccctcta 20572273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 27307303 - 27307266
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  27307303 agagaaatgatatttgtacaatcaatttgtgacaactt 27307266  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 29795446 - 29795483
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  29795446 agagaaatgatatttgtacaaccattttgtgacaactt 29795483  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 36909915 - 36909878
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  36909915 agagaaatgatatttgtacaaccattttgtgacaactt 36909878  T

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Target: scaffold0592 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 700
Target Start/End: Complemental strand, 8379 - 8339
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttctt 700  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  8379 agagaaattatatttgtacaaccattttgtgacaacttctt 8339  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 704
Target Start/End: Original strand, 48945846 - 48945890
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  48945846 agagaaatgatatttgtacaaccactttgtgacaacttcttgaca 48945890  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 704
Target Start/End: Complemental strand, 55344368 - 55344324
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||    
T  55344368 agagaaatgatatttgtacaaccattttgtgataacttcttgaca 55344324  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 699
Target Start/End: Complemental strand, 3958090 - 3958051
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaacttct 699  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  3958090 agagaaatgatatttgtacaatcaatttgtgacaacttct 3958051  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 704
Target Start/End: Complemental strand, 20380960 - 20380917
Alignment:
Q  661 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    ||||||| |||||||||||| || ||||||||||||||||||||    
T  20380960 gagaaatgatatttgtacaaccactttgtgacaacttcttgaca 20380917  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 704
Target Start/End: Complemental strand, 31206921 - 31206879
Alignment:
Q  662 agaaatcatatttgtacaatcattttgtgacaacttcttgaca 704  Q
    |||||| |||||||||||||||||||||||||| || ||||||    
T  31206921 agaaatgatatttgtacaatcattttgtgacaaatttttgaca 31206879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 7286 - 7249
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  7286 agagaaatgatatttgtacaatcattttctgacaactt 7249  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 1765403 - 1765440
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  1765403 agagaaatgatatttgtacattcattttgtgacaactt 1765440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 8254026 - 8254063
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  8254026 agagaaatgatatttgtacaaccattttgtgacaactt 8254063  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 34021535 - 34021498
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  34021535 agagaaatgatatttgtacaatcaatttgtgacaactt 34021498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 35074162 - 35074125
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  35074162 agagaaatgatatttgtacaatcattttgggacaactt 35074125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 43169814 - 43169777
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  43169814 agagaaatgatatttgtacaaccattttgtgacaactt 43169777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 47683800 - 47683837
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  47683800 agagaaatgatatttgtacaaccattttgtgacaactt 47683837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 48405409 - 48405446
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  48405409 agagaaatgatatttgtacaaccattttgtgacaactt 48405446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 49196695 - 49196732
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  49196695 agagaaatgatatttgtacaaccattttgtgacaactt 49196732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 52454166 - 52454129
Alignment:
Q  660 agagaaatcatatttgtacaatcattttgtgacaactt 697  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  52454166 agagaaatgatatttgtacaatcaatttgtgacaactt 52454129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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