View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15863_high_2 (Length: 309)

Name: NF15863_high_2
Description: NF15863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15863_high_2
NF15863_high_2
[»] chr4 (6 HSPs)
chr4 (2-292)||(45893069-45893361)
chr4 (2-277)||(48665310-48665590)
chr4 (3-277)||(21800811-21801090)
chr4 (156-274)||(49421225-49421339)
chr4 (2-45)||(12583630-12583673)
chr4 (24-89)||(49421114-49421179)
[»] chr2 (3 HSPs)
chr2 (9-278)||(36657890-36658158)
chr2 (216-277)||(29463346-29463407)
chr2 (26-88)||(20361535-20361597)
[»] chr7 (11 HSPs)
chr7 (2-274)||(23772906-23773181)
chr7 (62-277)||(26469658-26469869)
chr7 (62-277)||(26546130-26546341)
chr7 (188-278)||(12119386-12119473)
chr7 (16-89)||(12119549-12119621)
chr7 (16-115)||(22859649-22859747)
chr7 (2-67)||(26469940-26470005)
chr7 (2-67)||(26546380-26546445)
chr7 (12-113)||(11275814-11275915)
chr7 (29-110)||(48433880-48433961)
chr7 (26-110)||(2198207-2198291)
[»] chr3 (1 HSPs)
chr3 (18-278)||(6000317-6000574)
[»] scaffold0219 (1 HSPs)
scaffold0219 (7-224)||(6324-6533)
[»] chr6 (1 HSPs)
chr6 (14-278)||(23660777-23661046)
[»] scaffold0527 (3 HSPs)
scaffold0527 (2-135)||(3705-3838)
scaffold0527 (2-68)||(11768-11834)
scaffold0527 (146-211)||(3824-3889)
[»] chr1 (3 HSPs)
chr1 (2-108)||(16180881-16180990)
chr1 (23-124)||(9004805-9004907)
chr1 (223-261)||(9004696-9004734)
[»] chr5 (1 HSPs)
chr5 (218-274)||(32538642-32538698)
[»] chr8 (2 HSPs)
chr8 (153-248)||(923310-923403)
chr8 (24-115)||(923420-923512)
[»] scaffold0445 (1 HSPs)
scaffold0445 (230-278)||(7112-7160)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 45893069 - 45893361
Alignment:
Q  2 catcaacgacgatctgaaacctataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaaacatgtgacacat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45893069 catcaacgacgatctgaaacctataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacatgaaaacatgtgacacat 45893168  T
Q  102 atttgtcatcattgaggctaaaaaatactaacat--tatttttaacaaaaaatactgacatatttaaaaattcacggtgcgtagatatttttcatcaata 199  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  45893169 atttgtcatcattgaggcaaaaaaatactaacatattatttttaacaaaaaatactgacatatttaaaaattcacggtgcgtagatgcttttcatcaata 45893268  T
Q  200 aataaataaaataaacacaatttgagattgaaaaataatagtctatcacccgagcattgcacaggttaacacactagtttgatctatcaaacc 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  45893269 aataaataaaataaacacaatttgagattgaaaaataatagtctatcacccgcgcattgcacgggttaacacactagtttgatctatcaaacc 45893361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 2 - 277
Target Start/End: Complemental strand, 48665590 - 48665310
Alignment:
Q  2 catcaacgacgatctgaaacctataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaaacatgtgacacat 101  Q
    |||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48665590 catcgacgacgatctaaaacccataaatatttttttcatttatacataaaaacacgggacatatatttaccactgataaacataaaaacatgtgacacat 48665491  T
Q  102 atttgtcatcattgaggctaaaaaatactaaca--ttatttttaac-aaaaaatactgacatatttaaaaattcacggtgcgtagatatttttcatcaat 198  Q
    |||||||||||||| ||| ||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||     
T  48665490 atttgtcatcattgcggc-aaaaaatactaacatgttatttttaacaaaaaaatactgacatatttaaaaattcacggtgcgtggatgtttttcatcaaa 48665392  T
Q  199 aaataaataaaataaacacaatttgagattgaaaaataatagtctatcacccgagc----attgcacaggttaacacactagt 277  Q
    ||||||||||||| || ||||||||||||||||||||||||| |||||||||  ||    ||||||| |||||||||||||||    
T  48665391 aaataaataaaat-aatacaatttgagattgaaaaataatagcctatcacccatgcattaattgcacgggttaacacactagt 48665310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 3 - 277
Target Start/End: Complemental strand, 21801090 - 21800811
Alignment:
Q  3 atcaacgacgatctgaaacctataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaaa-----catgtgac 97  Q
    |||||||  ||||||||||| ||||||||||||| ||||||||||||||||||||  |||||||||||||| | |||||||||||||     ||||||||    
T  21801090 atcaacggtgatctgaaacccataaatatatttt-catttatacataaaaacacgtaacatatatttaccactaataaacataaaaaagaaacatgtgac 21800992  T
Q  98 acatatttgtcatcattgaggcta---aaaaatactaacat--tatttttaacaaaaaatactgacatatttaaaaattcacggtgcgtagatatttttc 192  Q
    |||||||| ||||||||| ||| |   |||||| |||| ||  ||||||| ||||||||||||||||||||||||||||||| |    || ||| |||||    
T  21800991 acatatttatcatcattgtggcaataaaaaaattctaaaatattatttttgacaaaaaatactgacatatttaaaaattcacagga--taaataattttc 21800894  T
Q  193 atcaataaataaataaaataaacacaatttgagattgaaaaataatagtctatcacccgagcattgcacaggttaacacactagt 277  Q
     |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  21800893 ttcaataaataaa-aaaataaa-acaatttgagattgaaaaataatagtctatcacccgtgcattgcacgggttaacacactagt 21800811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 49421225 - 49421339
Alignment:
Q  156 gacatatttaaaaattcacggtgcgtagatatttttcatcaataaataaataaaataaacacaatttgagattgaaaaataatagtctatcacccgagca 255  Q
    |||||||||||||||||||||    || ||| |||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||    
T  49421225 gacatatttaaaaattcacggga--taaataattttcatcgataaataaa-aaaataaa-acaatttgagattgaaaaataatagtctatcacccgtgca 49421320  T
Q  256 ttgcacaggttaacacact 274  Q
    |||| | ||||||||||||    
T  49421321 ttgcgcgggttaacacact 49421339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 12583630 - 12583673
Alignment:
Q  2 catcaacgacgatctgaaacctataaatatatttttcatttata 45  Q
    |||| |||||||||||||||| ||||||||||||||||||||||    
T  12583630 catcgacgacgatctgaaacccataaatatatttttcatttata 12583673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 49421114 - 49421179
Alignment:
Q  24 ataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaaa 89  Q
    ||||||||||||||| ||||| |||||||| ||| ||||||| |||| || | |||||||||||||    
T  49421114 ataaatatatttttcttttatgcataaaaatacgagacatatgtttatcactaataaacataaaaa 49421179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 36658158 - 36657890
Alignment:
Q  9 gacgatctgaaacctataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaaacatgtgacacatatttgtc 108  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  36658158 gacgatctgaaacccataaatatacttttcatttatacataaaaacacgggacatatatttatcactgataaacataaaaacatgtgacacatatttgtc 36658059  T
Q  109 atcattgaggctaaaaaatactaacattatttttaacaaaaaatactgacatatttaaaaattcacggtgcgtagatatttttcatcaataaataaataa 208  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||    
T  36658058 atcattgtggcaaaaaaatactaacattatttttaaccaaaaatactgacatatttaaaaattcatggtgcgtagatacttttcattaataaataaataa 36657959  T
Q  209 aataaacacaatttgagattgaaaaataatagtctatcacccgagcattgcacaggttaacacactagtt 278  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  36657958 aataaa-acaatttgagattgaaaaataatagtctatcacccgtgcattgcacgggttaacacactagtt 36657890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 29463407 - 29463346
Alignment:
Q  216 acaatttgagattgaaaaataatagtctatcacccgagcattgcacaggttaacacactagt 277  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||| |||||||||||||||    
T  29463407 acaatttaagattgataaataatagtctatcacccgtgcattgcacgggttaacacactagt 29463346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 20361535 - 20361597
Alignment:
Q  26 aaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaa 88  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||  | | ||||||||||||    
T  20361535 aaatatatttttcacttatacataaaaacacaagacatatatttataactaataaacataaaa 20361597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 2 - 274
Target Start/End: Complemental strand, 23773181 - 23772906
Alignment:
Q  2 catcaacgacgatctgaaacctataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaaacatgtgacacat 101  Q
    |||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  23773181 catcgacgacgatctgaaactcataaatatatttttcatttatacataaaaacacgggacatatatttaccactgataaacataaaaacctgtgacacat 23773082  T
Q  102 atttgtcatcattgaggc-taaaaaatactaac--attatttttaacaaa-aaatactgacatatttaaaaattcacggtgcgtagatatttttcatcaa 197  Q
    |||||||||||||| |||  |||||||| ||||  |||||||||||||||   ||||||||||||||||| ||||||| |||||||||| ||||||||||    
T  23773081 atttgtcatcattgcggcaaaaaaaatattaacatattatttttaacaaatctatactgacatatttaaatattcacgctgcgtagatacttttcatcaa 23772982  T
Q  198 taaataaataaaataaacacaatttgagattgaaaaataatagtctatcacccgagcattgcacaggttaacacact 274  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||    
T  23772981 taaataaataaaataaa-ataatttgagattgaaaaataatagtctatcacacgtgcattgcacggattaacacact 23772906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 62 - 277
Target Start/End: Complemental strand, 26469869 - 26469658
Alignment:
Q  62 atatatttaccattgataaacataaaaacatgtgacacatatttgtcatcattgaggct-aaaaaatactaac--attatttttaacaaaa-aatactga 157  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||  |||||||||||||||| |||| |||    
T  26469869 atatatttaccactgataaacataaaaacatgtgacacatatttgtcatcattgtggctaaaaaaatattaacatattatttttaacaaaacaatattga 26469770  T
Q  158 catatttaaaaattcacggtgcgtagatatttttcatcaataaataaataaaataaacacaatttgagattgaaaaataatagtctatcacccgagcatt 257  Q
    ||||||| |||||||| |||||||||||  |||||||||||||| ||| ||||       || | ||||||||||||||||||||||||||||| ||||     
T  26469769 catatttcaaaattcatggtgcgtagatgcttttcatcaataaa-aaagaaaa-------aaatagagattgaaaaataatagtctatcacccgtgcatc 26469678  T
Q  258 gcacaggttaacacactagt 277  Q
    |||  |||||||||||||||    
T  26469677 gcaagggttaacacactagt 26469658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 62 - 277
Target Start/End: Complemental strand, 26546341 - 26546130
Alignment:
Q  62 atatatttaccattgataaacataaaaacatgtgacacatatttgtcatcattgaggct-aaaaaatactaac--attatttttaacaaaa-aatactga 157  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||  |||||||||||||||| |||| |||    
T  26546341 atatatttaccactgataaacataaaaacatgtgacacatatttgtcatcattgtggctaaaaaaatattaacatattatttttaacaaaacaatattga 26546242  T
Q  158 catatttaaaaattcacggtgcgtagatatttttcatcaataaataaataaaataaacacaatttgagattgaaaaataatagtctatcacccgagcatt 257  Q
    ||||||| |||||||| |||||||||||  |||||||||||||| ||| ||||       || | ||||||||||||||||||||||||||||| ||||     
T  26546241 catatttcaaaattcatggtgcgtagatgcttttcatcaataaa-aaagaaaa-------aaatagagattgaaaaataatagtctatcacccgtgcatc 26546150  T
Q  258 gcacaggttaacacactagt 277  Q
    |||  |||||||||||||||    
T  26546149 gcaagggttaacacactagt 26546130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 188 - 278
Target Start/End: Complemental strand, 12119473 - 12119386
Alignment:
Q  188 ttttcatcaataaataaataaaataaacacaatttgagattgaaaaataatagtctatcacccgagcattgcacaggttaacacactagtt 278  Q
    |||||||||||||||||||||| ||||||  |||||||||| |||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  12119473 ttttcatcaataaataaataaattaaaca--atttgagatt-aaaaataatagtttatcacccgtgcattgtacaggttaacacactagtt 12119386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 12119621 - 12119549
Alignment:
Q  16 tgaaacctataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaaa 89  Q
    ||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| || | |||||||||||||    
T  12119621 tgaaacctataaatatatttttcatttatgcat-aaaacatgggacatatatttatcaataataaacataaaaa 12119549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 22859747 - 22859649
Alignment:
Q  16 tgaaacctataaatatatttttcatttatacataaaaa-cacgggacatatatttaccattgataaacataaaaacatgtgacacatatttgtcatcatt 114  Q
    ||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||| | |||  ||||||||||||| ||||||||||||||| | ||||||    
T  22859747 tgaaacccataaatatatttt-catttatacataaaaaacaccggacatatattcatcatcaataaacataaaaa-atgtgacacatatttattatcatt 22859650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 26470005 - 26469940
Alignment:
Q  2 catcaacgacgatctgaaacctataaatatatttttcatttatacataaaaacacgggacatatat 67  Q
    |||| ||||||| |||||||| ||||||||||||| |||||||||| |||||||||||| ||||||    
T  26470005 catcgacgacgaactgaaacccataaatatattttccatttatacacaaaaacacgggatatatat 26469940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 26546445 - 26546380
Alignment:
Q  2 catcaacgacgatctgaaacctataaatatatttttcatttatacataaaaacacgggacatatat 67  Q
    |||| ||||||| |||||||| ||||||||||||| |||||||||| |||||||||||| ||||||    
T  26546445 catcgacgacgaactgaaacccataaatatattttccatttatacacaaaaacacgggatatatat 26546380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 11275915 - 11275814
Alignment:
Q  12 gatctgaaacctataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaa-acatgtgacacatatttgtcat 110  Q
    ||||||||| |  |||||||||||||| ||||| |||||||| ||  |||||||||||| || | |||||| ||||| | ||| ||||||||||||||||    
T  11275915 gatctgaaatccctaaatatatttttcttttatgcataaaaa-acatgacatatatttatcactaataaacgtaaaagatatgagacacatatttgtcat 11275817  T
Q  111 cat 113  Q
    |||    
T  11275816 cat 11275814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 48433961 - 48433880
Alignment:
Q  29 tatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaaacatgtgacacatatttgtcat 110  Q
    ||||||||||| | || |||||||||||||||||||  |||| || | ||||||||||||| ||  || |||||||||||||    
T  48433961 tatatttttcactgatgcataaaaacacgggacataagtttatcactaataaacataaaaatataggatacatatttgtcat 48433880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 2198207 - 2198291
Alignment:
Q  26 aaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaaacatgtgacacatatttgtcat 110  Q
    ||||||||||||||   || |||||||||| | ||||||||| || || | ||||||||||||| ||  || |||||||||||||    
T  2198207 aaatatatttttcacagatgcataaaaacatgagacatatatctagcactaataaacataaaaatataggatacatatttgtcat 2198291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 6000317 - 6000574
Alignment:
Q  18 aaacctataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaaacatgtgacacatatttgtcatcattgag 117  Q
    ||||| |||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  6000317 aaacccataaatatatttttcatttatacacaaaaacacgggatatatatttaccactgataaacataaaaacatgtgacacatatttgtcatcattgtg 6000416  T
Q  118 gct-aaaaaatactaac--attatttttaacaaaa-aatactgacatatttaaaaattcacggtgcgtagatatttttcatcaataaataaataaaataa 213  Q
    ||| |||||||| ||||  |||||||||||||||| |||| |||||||||| |||||||||||||| |||||  |||||||||||||| ||||||||       
T  6000417 gctaaaaaaatattaacatattatttttaacaaaacaatattgacatatttcaaaattcacggtgcatagatgcttttcatcaataaaaaaataaaa--- 6000513  T
Q  214 acacaatttgagattgaaaaataatagtctatcacccgagcattgcacaggttaacacactagtt 278  Q
        || ||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||    
T  6000514 ----aaattgagattgaaaaataatagtttatcactcgtgcattgcacaggttaacacactagtt 6000574  T

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Target: scaffold0219 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 6324 - 6533
Alignment:
Q  7 acgacgatctgaaacctataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaaacatgtgacacatatttg 106  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6324 acgacgatctgaaacccgtaaatatatttttcatttatacataaaaacacgggacatatatttaccactgataaacataaaaacatgtgacacatatttg 6423  T
Q  107 tcatcattgaggctaaaaaatactaac--attatttttaacaaaaaatactgacatatttaaaaattcacggtgcgtagatatttttcatcaataaataa 204  Q
    |||||||||  || |||||||||||||  ||||||||||||||         ||||||||||||||||||||||||||| |  |||||||||||||||||    
T  6424 tcatcattgtagcaaaaaaatactaacatattatttttaacaa---------acatatttaaaaattcacggtgcgtaggtgcttttcatcaataaataa 6514  T
Q  205 ataaaataaacacaatttga 224  Q
    |||||||||| |||||||||    
T  6515 ataaaataaa-acaatttga 6533  T

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Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 23661046 - 23660777
Alignment:
Q  14 tctgaaacctataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaaacatgtgacacatatttgtcatcat 113  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||| ||||||||| || ||||||||||||||||||||||||||||||| |||||||    
T  23661046 tctgaaacccataaatatatttttcatttatacataaaaacgcaggatatatatttagcactgataaacataaaaacatgtgacacatatttctcatcat 23660947  T
Q  114 tgagg--ctaaaaaatactaac--attatttttaacaaaaaatactgacatatttaaaaattcacggtgcgtagatatttttcatcaataaat-aaataa 208  Q
    || ||    |||||| ||||||  |||||||||||||||||||||| ||||| ||||||||||||| || ||||||  |||  |||||||||| ||||||    
T  23660946 tgcgggaagaaaaaaaactaacatattatttttaacaaaaaatacttacatagttaaaaattcacgatgtgtagatgctttcaatcaataaataaaataa 23660847  T
Q  209 -aataaacacaatttgagattgaaaaataatagtctatcacccgagcattgcacaggttaacacactagtt 278  Q
     |||||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  23660846 taataaa-acaatttgagatagaaaaataatagtctatcacccgtgcattgcaccggttaacgcactagtt 23660777  T

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Target: scaffold0527 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 3705 - 3838
Alignment:
Q  2 catcaacgacgatctgaaacctataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacataaaaacatgtgacacat 101  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  3705 catcgacgacgatctaaaacccataaatatatttttcatttatacataaaaacacgggacatatattcaccactgataaacataaaaacatgtgacacat 3804  T
Q  102 atttgtcatcattgaggctaaaaaatactaacat 135  Q
    |||||||||||||| ||| |||||||||| ||||    
T  3805 atttgtcatcattgcggcaaaaaaatactgacat 3838  T

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Target: scaffold0527; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 11768 - 11834
Alignment:
Q  2 catcaacgacgatctgaaacctataaatatatttttcatttatacataaaaacacgggacatatatt 68  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11768 catcgacgacgatctaaaacccataaatatatttttcatttatacataaaaacacgggacatatatt 11834  T

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Target: scaffold0527; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 3824 - 3889
Alignment:
Q  146 aaaaaatactgacatatttaaaaattcacggtgcgtagatatttttcatcaataaataaataaaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||    
T  3824 aaaaaatactgacatatttaaaaattcacggtgcgtagatgcttttcatcgataaataaaaaaaat 3889  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 16180881 - 16180990
Alignment:
Q  2 catcaacgacgatctgaaacctataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacat---aaaaacatgtgaca 98  Q
    |||| |||||||||||||||| ||  | | ||||||||||||||||||||||||||||||||||||||| || | ||||||||   ||||||||||||||    
T  16180881 catcgacgacgatctgaaacccatctacacatttttcatttatacataaaaacacgggacatatatttatcactaataaacataaaaaaaacatgtgaca 16180980  T
Q  99 catatttgtc 108  Q
    ||||||||||    
T  16180981 catatttgtc 16180990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 9004907 - 9004805
Alignment:
Q  23 tataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacat-aaaaacatgtgacacatatttgtcatcattgaggcta 121  Q
    ||||||||||||| |||||||| |||||||||| | |||||||||||| || | ||| |||| ||||| ||| ||| | ||||||||||||||| ||| |    
T  9004907 tataaatatatttctcatttatgcataaaaacaagtgacatatatttatcactaatagacataaaaaatatgggacgcgtatttgtcatcattgcggcaa 9004808  T
Q  122 aaa 124  Q
    |||    
T  9004807 aaa 9004805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 9004734 - 9004696
Alignment:
Q  223 gagattgaaaaataatagtctatcacccgagcattgcac 261  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  9004734 gagattaaaaaataatagtctatcacccgtgcattgcac 9004696  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 32538642 - 32538698
Alignment:
Q  218 aatttgagattgaaaaataatagtctatcacccgagcattgcacaggttaacacact 274  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  32538642 aatttgagattgaaaaataatagtctatcacccgtgcattgcacaagttaacacact 32538698  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 923403 - 923310
Alignment:
Q  153 actgacatatttaaaaattcacggtgcgtagatatttttcatcaataaataaata-aaataaacacaatttgagattgaaaaataatagtctatcac 248  Q
    |||||||||||||||||||||||     || |||||||| ||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||    
T  923403 actgacatatttaaaaattcacgaaa--taaatatttttgatcaataaataaaaataaataaa-acaatttgaaattgaaaaataatagtctatcac 923310  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 923512 - 923420
Alignment:
Q  24 ataaatatatttttcatttatacataaaaacacgggacatatatttaccattgataaacata---aaaacatgtgacacatatttgtcatcattg 115  Q
    ||||||||||||| |||||| |||||||| ||| ||||||||||||| || | |||||||||   ||||||||||| ||||||||||||||||||    
T  923512 ataaatatatttt-catttacacataaaagcaccggacatatatttatcactaataaacataaaaaaaacatgtga-acatatttgtcatcattg 923420  T

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Target: scaffold0445 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 7112 - 7160
Alignment:
Q  230 aaaaataatagtctatcacccgagcattgcacaggttaacacactagtt 278  Q
    ||||| |||||||||||||||| |||||||||  |||||||||||||||    
T  7112 aaaaaaaatagtctatcacccgtgcattgcacgagttaacacactagtt 7160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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