View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15863_low_4 (Length: 277)
Name: NF15863_low_4
Description: NF15863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15863_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 51294379 - 51294090
Alignment:
| Q |
1 |
catcatcataatagtaataatcatccctactgcttcctccacttgagaaacaagacttcaacataccacaaaaggaagaggacttcttgcctcccatatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51294379 |
catcatcataatagtaataatcatccctactgcttcctccacttgagaaacaagacttcaacataccacaaaaggaagaggacttcttgcctcccatatt |
51294280 |
T |
|
| Q |
101 |
atcactataagatatgatttttggaagaatacttgacctctaagctaacctatattattatgtgaggtatcttcttt---------------tagtagca |
185 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51294279 |
atcactataagatatgatttttggaagattacttgacctctaagctaacctatattattatgtgaggtatcttcttttagttggtattatggtagtagca |
51294180 |
T |
|
| Q |
186 |
agcttggaatagcagtgcatatttatagcctacaggaaagaaagtgaatatgccacatgcaatgcaacaaaaatatgagtattttatgat |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51294179 |
agcttggaatagcagtgcatatttatagcctacaggaaagaaagtgaatatgccacatgcaatgcaacaaaaatatgagtattttatgat |
51294090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University