View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15863_low_5 (Length: 250)
Name: NF15863_low_5
Description: NF15863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15863_low_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 51293936 - 51294102
Alignment:
| Q |
84 |
aagttttacaaccatgataaatcaacaactatttttattagccatttcaaggaatcttgatcgtttcatttagctgagtaattattattatttatctgaa |
183 |
Q |
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| T |
51293936 |
aagttttacaaccatgataaatcaacaactatttttattagccatttcaaggaatcttgatcgtttcatttagctgagtaattattattatttatcagaa |
51294035 |
T |
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| Q |
184 |
attaaagaaaagctttaccaaattaatcttattaaccagggatgtatttccattatcataaaatact |
250 |
Q |
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| T |
51294036 |
attaaagaaaagctttaccaaattaatcttattaaccagggatgtatttccattatcataaaatact |
51294102 |
T |
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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 51293812 - 51293890
Alignment:
| Q |
11 |
caaaggcaaagctgggtgggtag---tagtgttgcaaggaaaaagggaagaaccgcagcaggtttagtcaaaatacaag |
86 |
Q |
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| T |
51293812 |
caaaagcaaagctgggtgggtagtagtagtgttgcaaggaaaaagggaagaaccgcagcaggttaagtcaaaatacaag |
51293890 |
T |
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