View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15863_low_7 (Length: 236)
Name: NF15863_low_7
Description: NF15863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15863_low_7 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 1029234 - 1029452
Alignment:
| Q |
18 |
ggaatggtgcttgaaacataagatgcatgtcctgtttattttgattgcttagttttattttctttcttctttgttatagcttctttacattgcggttatg |
117 |
Q |
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| T |
1029234 |
ggaatggtgcttgaaacataagatgcatgtcctgtttattttgattgcttagttttattttctttcttctttgttatagcttctttacattgcggttatg |
1029333 |
T |
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| Q |
118 |
acatgtggaatatgaaacctctgttgattaatgattattaagatatgcaattttgatatgcattatgttatgtttgtgcgtaattatcggttgcgatgta |
217 |
Q |
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| T |
1029334 |
acatgtggaatatgaaacctctgttaattaatgattattaagatatgcaattttgatatgcattatgttatgtttgtgcgtaattatcggttgcgatgta |
1029433 |
T |
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| Q |
218 |
gtctcaattccagttgcat |
236 |
Q |
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| T |
1029434 |
gtctcaattccagttgcat |
1029452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 1011928 - 1012139
Alignment:
| Q |
18 |
ggaatggtgcttgaaacataagatgcatgtcctgtttattttgattgcttagttttattttctttcttctttgttatagcttctttacattgcggttatg |
117 |
Q |
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| T |
1011928 |
ggaatggtgcttgaaacataagatgcatgtcctgtttattttgattgcttagttttattttctttcttctatgttataacttctttccattgaggttatg |
1012027 |
T |
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| Q |
118 |
acatgtggaatatgaaacctctgttgattaatgattattaagatatgcaattttgatatgcattatgttatgtttgtgcgtaattatcggttgcgatgta |
217 |
Q |
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| T |
1012028 |
acatgtggaatatgaaacctctgtttattaatgattattaagatatgcaattttgatatgca-----ttatgtttgtgcgtagttatcggttgcgattta |
1012122 |
T |
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| Q |
218 |
gtctcaattccagttgc |
234 |
Q |
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| T |
1012123 |
gtctcagttccagttgc |
1012139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 1029456 - 1029508
Alignment:
| Q |
184 |
gttatgtttgtgcgtaattatcggttgcgatgtagtctcaattccagttgcat |
236 |
Q |
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| T |
1029456 |
gttatgtttgtgtgtaattgtcggttgcgatgtagcctcaattccagttgcat |
1029508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 991518 - 991652
Alignment:
| Q |
43 |
catgtcctgtttattttgattgcttagttttattttctttcttctttgttatagcttcttta------cattgcggttatgacatgtggaatatgaaacc |
136 |
Q |
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| T |
991518 |
catgtcatgtttattttaattgcgtagttttattttc---cttctatgttatagttttttttttcttccattgaggttccgacatgtagaatatgaaacc |
991614 |
T |
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| Q |
137 |
tctgttgattaatgattattaagatatgcaattttgat |
174 |
Q |
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| T |
991615 |
tctgttaattgatgatgattaagatatgtagttttgat |
991652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 991781 - 991829
Alignment:
| Q |
188 |
tgtttgtgcgtaattatcggttgcgatgtagtctcaattccagttgcat |
236 |
Q |
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| T |
991781 |
tgtttgtgcatagttgtcggttgccatgtagtctcaattccagttgcat |
991829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 1012145 - 1012197
Alignment:
| Q |
184 |
gttatgtttgtgcgtaattatcggttgcgatgtagtctcaattccagttgcat |
236 |
Q |
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| T |
1012145 |
gttatgtttgtgcataattgtcggttatgatgtagcctcaattgcagttgcat |
1012197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 23645682 - 23645755
Alignment:
| Q |
21 |
atggtgcttgaaacataagatgcatgtcctgtttattttgattgcttagttttattttctttcttctttgttat |
94 |
Q |
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| T |
23645682 |
atggtgcttgaaatataagatgcatgtcctgtttcttttaattgctgagtattattttccttcttctttgttat |
23645755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 23812892 - 23812819
Alignment:
| Q |
21 |
atggtgcttgaaacataagatgcatgtcctgtttattttgattgcttagttttattttctttcttctttgttat |
94 |
Q |
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| T |
23812892 |
atggtgcttgaaatataagatgcatgtcctgtttcttttaattgctgagtattattttccttcttctttgttat |
23812819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 33038850 - 33038911
Alignment:
| Q |
20 |
aatggtgcttgaaacataagatgcatgtcctgtttattttgattgcttagttttattttctt |
81 |
Q |
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| T |
33038850 |
aatggtgcttgcaacataagatgcatgtcttgtttctatcaattgcagagttttattttctt |
33038911 |
T |
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