View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15864_high_1 (Length: 985)

Name: NF15864_high_1
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15864_high_1
NF15864_high_1
[»] chr5 (8 HSPs)
chr5 (562-961)||(16052724-16053122)
chr5 (9-209)||(19598759-19598957)
chr5 (421-531)||(16052533-16052643)
chr5 (208-361)||(16052321-16052471)
chr5 (717-877)||(15936203-15936363)
chr5 (587-665)||(15936391-15936469)
chr5 (87-190)||(13951464-13951564)
chr5 (215-254)||(42564264-42564303)
[»] chr3 (7 HSPs)
chr3 (9-209)||(53534844-53535042)
chr3 (737-874)||(36309075-36309212)
chr3 (813-908)||(36313269-36313364)
chr3 (177-209)||(53533654-53533686)
chr3 (736-782)||(36327440-36327486)
chr3 (813-926)||(36333336-36333449)
chr3 (737-782)||(36335970-36336015)
[»] chr1 (3 HSPs)
chr1 (9-209)||(4753423-4753621)
chr1 (9-182)||(38202432-38202604)
chr1 (177-209)||(4756677-4756709)
[»] chr8 (1 HSPs)
chr8 (9-209)||(42915883-42916081)
[»] chr7 (3 HSPs)
chr7 (9-206)||(23252770-23252965)
chr7 (18-209)||(21944680-21944868)
chr7 (177-209)||(23255547-23255579)
[»] chr4 (3 HSPs)
chr4 (9-205)||(13096238-13096431)
chr4 (9-209)||(17382371-17382568)
chr4 (153-214)||(25063602-25063663)
[»] chr2 (1 HSPs)
chr2 (9-132)||(41543723-41543845)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 562 - 961
Target Start/End: Original strand, 16052724 - 16053122
Alignment:
Q  562 gcttacattcgagatcagagggagtacatgacaagaaatccaccgtataatataaaaaccttatttttcatcat--caccaatactacaacattcagtag 659  Q
    ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  16052724 gcttacatttgagaccggagggagtacatgacaagaaatccaccgtataatataaaaaccttatttttcatcatatcaccaatactacaacattcagtag 16052823  T
Q  660 taccaaggatcatagtctccgccaaagtcatattcataactaggggagtaatcatagtcatcaaagtcataagaatttggcagttgcaaatgattgatct 759  Q
    ||||||| |||||||||||||||||||||||||||| ||   |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||     
T  16052824 taccaagaatcatagtctccgccaaagtcatattcacaa---ggggagtaatcatagtcatcaaagacataaaaatttggcagtcgcaaatgattgatcg 16052920  T
Q  760 gctcagtgcaccttttcttcaaacttatacttaattccaaagaataacatcgtcgaatgtcaagagatttaagaaaagggcacttatcaagaatggcaag 859  Q
    | ||| |||||||||||| ||||||| |||||||||| | | ||  ||||| | ||| ||||||||||| |||||||||||| |||||||||||||| ||    
T  16052921 gatcaatgcaccttttctccaaacttttacttaattctagataacgacatccttgaaggtcaagagattcaagaaaagggcatttatcaagaatggcgag 16053020  T
Q  860 caaaccaacattagtgaggctgtctcccttgatatcaagatggcgtagattagtcatcgtatcagcagtaactaaggccaaatcatcagaaggcttggcg 959  Q
    ||||||| ||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16053021 caaaccatcattagtgaggttgtctcccttgatatcaagatagcatagattagtcatcgtatcagcaataactaaggccaaatcatcagaaggcttggcg 16053120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 19598957 - 19598759
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||||| |||||  |||||||| |||||||||||||||||||||||| |||||||||||    
T  19598957 gagagagaaggaaccgtgtgaattcattgccttggagtttgaggaatttgggacggtggcaatcaagttggagtaattgtgttgccaagggtaaaagagg 19598858  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggag 207  Q
    |||| ||||||||||||||||||||||||||||||||||||    ||||||||||||||||| || || ||||||| | || | | ||||||||||||||    
T  19598857 aaaaaacatatttaattttaacaaagttcacaaaagttaaa---gatttcttaatatgcgtagaagtgccaaagcggcatataatttgggacggagggag 19598761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 421 - 531
Target Start/End: Original strand, 16052533 - 16052643
Alignment:
Q  421 gatagtcctaaccaattgtttaacaaagcatgccaattaggttgccttcaacaaaatcctttaaaacatcagtagcatgagtatcatcaaggatcacgat 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  16052533 gatagtcctaaccaattgtttaacaaagcatgccaattaggttgccttcaacaaaatcctttaaaacatcattagcatgagtatcatcaaggatcacaat 16052632  T
Q  521 aaatacttcat 531  Q
    |||||||||||    
T  16052633 aaatacttcat 16052643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 208 - 361
Target Start/End: Original strand, 16052321 - 16052471
Alignment:
Q  208 tagtataagctaatacaagcaataagtgggtgattactgcataattgaggcaaaaaggaaatactactacaaactttactctaattaattcttatctcan 307  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||||| ||     
T  16052321 tagtataagctaatacaagcaataagtggttgattactgcataattgaggcaaaaaggaaa---tactacaaattttactctaattaattcttatcacat 16052417  T
Q  308 nnnnnnatgcgtttttctatacgaccaaggagaaatcacacatagactttcatt 361  Q
          ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  16052418 ttttttatgcgttttcctatacgaccaaggtgaaatcacacatagactttcatt 16052471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 717 - 877
Target Start/End: Complemental strand, 15936363 - 15936203
Alignment:
Q  717 tcatcaaagtcataagaatttggcagttgcaaatgattgatctgctcagtgcaccttttcttcaaacttatacttaattccaaagaataacatcgtcgaa 816  Q
    |||||| ||||||||  | ||||||||||||||||||||||  | ||| |||||||||| | |||||||  ||| ||||| | | ||  ||||| | |||    
T  15936363 tcatcagagtcataacgaattggcagttgcaaatgattgattcgatcaatgcaccttttttccaaactttcactcaattcgagataacgacatccttgaa 15936264  T
Q  817 tgtcaagagatttaagaaaagggcacttatcaagaatggcaagcaaaccaacattagtgag 877  Q
     ||||||||||| ||||||||| || |||||||||||||| ||||||||| ||||||||||    
T  15936263 ggtcaagagattcaagaaaaggccatttatcaagaatggcgagcaaaccatcattagtgag 15936203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 587 - 665
Target Start/End: Complemental strand, 15936469 - 15936391
Alignment:
Q  587 acatgacaagaaatccaccgtataatataaaaaccttatttttcatcatcaccaatactacaacattcagtagtaccaa 665  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||||||||||| || ||||||||||||| |||||||||    
T  15936469 acatgacaagaaattcacagtataatataaaaactttatttttcatcatcactaagactacaacattcactagtaccaa 15936391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 13951564 - 13951464
Alignment:
Q  87 tgttgccaaaggtaaaagaggaaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgact 186  Q
    ||||| ||| ||||||||||| ||| | ||||||| |||| |||||||| |||||||||| |    |||||||||||| ||||||| ||||||||||||     
T  13951564 tgttgtcaagggtaaaagagggaaaaatatatttacttttgacaaagtttacaaaagttaga---gatttcttaatatacgtaaaagtgtcaaagcgaca 13951468  T
Q  187 taca 190  Q
    ||||    
T  13951467 taca 13951464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 42564264 - 42564303
Alignment:
Q  215 agctaatacaagcaataagtgggtgattactgcataattg 254  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  42564264 agctaatacaagcaataaattggtgattactgcataattg 42564303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 4e-87; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 53534844 - 53535042
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  53534844 gagagagaaggaaccatatgaattcattgccttggagttggaggaatgtgggatggtggcaattaagttggagtaattgtgttgccaagggtaaaagagg 53534943  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggag 207  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53534944 aaaacacatatttaattttaacaaagttcacaaaagttaaa---tatttcttaatatgcgtaaaagtgtcaaagcgacttacattgtgggacggagggag 53535040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 737 - 874
Target Start/End: Original strand, 36309075 - 36309212
Alignment:
Q  737 tggcagttgcaaatgattgatctgctcagtgcaccttttcttcaaacttatacttaattccaaagaataacatcgtcgaatgtcaagagatttaagaaaa 836  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||||||  ||| ||||| | | |||  ||||| |||||||||||||||||||| | |    
T  36309075 tggcagttgcaaatcattgatctgatcaatgcaccttttcttcaaactttcactcaattcaagataatgtcatcgacgaatgtcaagagatttaagcaga 36309174  T
Q  837 gggcacttatcaagaatggcaagcaaaccaacattagt 874  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  36309175 gggcacttaacaagaatggcatgcaaaccaacattagt 36309212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 813 - 908
Target Start/End: Original strand, 36313269 - 36313364
Alignment:
Q  813 cgaatgtcaagagatttaagaaaagggcacttatcaagaatggcaagcaaaccaacattagtgaggctgtctcccttgatatcaagatggcgtaga 908  Q
    |||||||||||||| | ||||| |||||| ||||||| |||||| |||| |||||  | ||||||  ||| ||| || ||||||||||||||||||    
T  36313269 cgaatgtcaagagactcaagaagagggcatttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtaga 36313364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 53533654 - 53533686
Alignment:
Q  177 caaagcgacttacattgtgggacggagggagta 209  Q
    |||||||||||||||||||||||||||||||||    
T  53533654 caaagcgacttacattgtgggacggagggagta 53533686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 736 - 782
Target Start/End: Original strand, 36327440 - 36327486
Alignment:
Q  736 ttggcagttgcaaatgattgatctgctcagtgcaccttttcttcaaa 782  Q
    |||||||||||||||  |||||||| ||| |||||||||||||||||    
T  36327440 ttggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaa 36327486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 813 - 926
Target Start/End: Original strand, 36333336 - 36333449
Alignment:
Q  813 cgaatgtcaagagatttaagaaaagggcacttatcaagaatggcaagcaaaccaacattagtgaggctgtctcccttgatatcaagatggcgtagattag 912  Q
    |||||||||||||| | ||||| |||||  ||||||| |||||| |||| |||||  | ||||||  ||| ||| || ||||||||||||| ||||  ||    
T  36333336 cgaatgtcaagagactcaagaagagggcctttatcaataatggcgagcacaccaagttgagtgagcttgtgtcctttcatatcaagatggcatagaccag 36333435  T
Q  913 tcatcgtatcagca 926  Q
     |||||| ||||||    
T  36333436 gcatcgtttcagca 36333449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 737 - 782
Target Start/End: Original strand, 36335970 - 36336015
Alignment:
Q  737 tggcagttgcaaatgattgatctgctcagtgcaccttttcttcaaa 782  Q
    ||||||||||||||  |||||||| ||| |||||||||||||||||    
T  36335970 tggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaa 36336015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 2e-82; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 4753621 - 4753423
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  4753621 gagagagaaggaatcatatgaattcattgccttggagttggaggaatgtgggatggtggcaattaagttggagtaattgtgttgccaagggtaaaagagg 4753522  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggag 207  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  4753521 aaaacacatatttaattttaacaaagttcacaaaagttaaa---tatttcttaatatacgtaaaagtgtcaaagcgacttacattgtgggacggagggag 4753425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 38202432 - 38202604
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||| |||||  |||||||| |||||||||||||||||||||||| |||||||||||    
T  38202432 gagagagaaggaaccgtgtgaattcattgccttggagttggaggaatttgggacggtggcaatcaagttggagtaattgtgttgccaagggtaaaagagg 38202531  T
Q  108 -aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagc 182  Q
     |||| |||||| |||||||||||||||||||||||||||||   |||||||||||||| |||||| |||||||||    
T  38202532 aaaaaaacatatctaattttaacaaagttcacaaaagttaaa---tatttcttaatatgtgtaaaagtgtcaaagc 38202604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 4756677 - 4756709
Alignment:
Q  177 caaagcgacttacattgtgggacggagggagta 209  Q
    |||||||||||||||||||||||||||||||||    
T  4756677 caaagcgacttacattgtgggacggagggagta 4756709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 42916081 - 42915883
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  42916081 gagagagaaggaatcatatgaattcattgccttggagttggaggaatgtgggacggtggcaattaagttggagtaattgtgttgccaagggtaaaagagg 42915982  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggag 207  Q
    |||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42915981 aaaacacatatttaattttaacaaagttcataaaagttaaa---tatttcttaatatgcgtaaaagtgtcaaagcgacttacattgtgggacggagggag 42915885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 3e-78; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 23252965 - 23252770
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  23252965 gagagagaaggaatcatatgaattcattgccttggagttggaggaatgtgggacggtggcaattaagttggagtaattgtgttgccaagggtaaaagagg 23252866  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggaggga 206  Q
    |||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23252865 aaaacacatatttaattttaacaaagttcataaaagttaaa---tatttcttaatatgcgaaaaaatgtcaaagcgacttacattgtgggacggaggga 23252770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 21944868 - 21944680
Alignment:
Q  18 gaaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagaggaaaacacata 117  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||||||||||||| | ||||||||||||| |||||    
T  21944868 gaaccgtgtgaattcattgccttggagttggaggaatttgggacggtgacaatcaagttggagtaattgtgttgccaaggataaaagaggaaaaaacata 21944769  T
Q  118 tttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggagta 209  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||| || |||||| || |||| | ||| ||||| ||||||    
T  21944768 tttaattttaacaaagttcacaaaagttaaa---gatttcttaatatgcgtaaaagtgccaaagcaacgtacaatttggaacggaaggagta 21944680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 23255547 - 23255579
Alignment:
Q  177 caaagcgacttacattgtgggacggagggagta 209  Q
    |||||||||||||||||||||||||||||||||    
T  23255547 caaagcgacttacattgtgggacggagggagta 23255579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 13096238 - 13096431
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| |||| |||||||||| | |||| ||||||||||||| ||| |  |||||||| ||||||| |||||||||||||||| |||||||||||    
T  13096238 gagagagaaggaaccgtgtgaattcaattccttagagttggaggaatttgg-acggtggcaatcaagttggggtaattgtgttgccaagggtaaaagagg 13096336  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggaggg 205  Q
    |||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||| |||| | ||||||||||||    
T  13096337 aaaaaacatatttaattttaacaaagttcacaaaagttaaa---tatttcttaatatgcgtaaaagtgtcaaagcgacatacaatttgggacggaggg 13096431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 17382371 - 17382568
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||| |||||  |||||||| |||||||| ||||||||||||||| |||||||||||    
T  17382371 gagagagaaggaaccgtgtgaattcattgccttggagttggaggaatttgggacggtggcaatcaagttggaataattgtgttgccaagggtaaaagagg 17382470  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggag 207  Q
    |||| |||||| |||||||||||||||||||||||||||||    ||||||||||||| |||||| || ||||||||| |||| | ||| ||||||||||    
T  17382471 aaaa-acatatctaattttaacaaagttcacaaaagttaaa---gatttcttaatatgtgtaaaagtgccaaagcgacgtacaatttggaacggagggag 17382566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 25063663 - 25063602
Alignment:
Q  153 atttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggagtagtata 214  Q
    ||||||||||||| || ||| || |||| || |||||| | |||||||||||||||||||||    
T  25063663 atttcttaatatgtgtgaaattgccaaaacgtcttacaatttgggacggagggagtagtata 25063602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 8e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 41543845 - 41543723
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||||||||||||| |||||||||||    
T  41543845 gagagagaaggaaccgtgtgaattcattgccttggagttggaggaatttgggacggtg-caatcaagttggagtaattgtgttgccaagggtaaaagagg 41543747  T
Q  108 aaaacacatatttaattttaacaaa 132  Q
    |||| |||||||||||||| |||||    
T  41543746 aaaa-acatatttaattttcacaaa 41543723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University