View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_high_11 (Length: 534)
Name: NF15864_high_11
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 48702308 - 48701877
Alignment:
| Q |
1 |
tttctctttcagccaatgatgatgctatcactcaagaactttataaaataatgactactatacccgctagagtatttattgtgcacatgtcaccaagtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48702308 |
tttctctttcagccaatgatgatgctatcactcaagaactttataaaataatgactactatacccgctagagtatttattgtgcacatgtcaccaagtct |
48702209 |
T |
|
| Q |
101 |
tggctctaaactttttaccttagcnnnnnnn-ttgggatgatgaatcaaggctatgtttggatagtaaccgatggtatggctaatttattcaactcattg |
199 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |
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| T |
48702208 |
tggctctaaactttttaccttagcaaaaaaaattgggatgatgaatcaaggctatgtttggatagtaaccgatggtatggctaatttgtttaattcattg |
48702109 |
T |
|
| Q |
200 |
agttttaatgtgagggaatcaatggaaggagtgttgggtgttaggacttatattcctagaacnnnnnnnctagatgattttagagttagatggaaaagga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
48702108 |
agttttaatgtgagggaatcaatggaaggagtgttgggtcttaggacttatattcctagaacaaaaaaactagatgattttagagttagatggaaaagta |
48702009 |
T |
|
| Q |
300 |
aattcataagtgacaatccaaaacttgttgacacaaatttgaacatttttggaatatgggcttatgatgctacaattgcattagcaatggctattgagaa |
399 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48702008 |
aattcataaatgacaatccaaaacttgttgacacaaatttgaacatttttggaatatgggcttatgatgctacaattgcattagcaatggctattgagaa |
48701909 |
T |
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| Q |
400 |
ggttggaattggaactaccaaatttggttaca |
431 |
Q |
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| T |
48701908 |
agttggaattggaaacaccaaatttgattaca |
48701877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 48714414 - 48713983
Alignment:
| Q |
1 |
tttctctttcagccaatgatgatgctatcactcaagaactttataaaataatgactactatacccgctagagtatttattgtgcacatgtcaccaagtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48714414 |
tttctctttcagccaatgatgatgctatcactcaagaactttataaaataatgactactatacccgctagagtatttattgtgcacatgtcaccaagtct |
48714315 |
T |
|
| Q |
101 |
tggctctaaactttttaccttagcnnnnnnn-ttgggatgatgaatcaaggctatgtttggatagtaaccgatggtatggctaatttattcaactcattg |
199 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||| |
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| T |
48714314 |
tggctctaaactttttaccttagcaaaaaaaattgggatgatgaatcaaggctatgtttggatagtaaccgatggtatggccaatttgtttaattcattg |
48714215 |
T |
|
| Q |
200 |
agttttaatgtgagggaatcaatggaaggagtgttgggtgttaggacttatattcctagaacnnnnnnnctagatgattttagagttagatggaaaagga |
299 |
Q |
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| T |
48714214 |
agttttaatgtgagggaatcaatggaaggagtgttgggtcttaggacttatattcctagaacaaaaaaactagatgattttagggttagatggaaaagga |
48714115 |
T |
|
| Q |
300 |
aattcataagtgacaatccaaaacttgttgacacaaatttgaacatttttggaatatgggcttatgatgctacaattgcattagcaatggctattgagaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48714114 |
aattcataagtgacaatccaaaacttgttgacacaaatttgaacatttttggaatatgggcttatgatgctacaattgcattagcaatggctattgagaa |
48714015 |
T |
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| Q |
400 |
ggttggaattggaactaccaaatttggttaca |
431 |
Q |
| |
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||||||||||||| |||||||||| ||||| |
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| T |
48714014 |
agttggaattggaaacaccaaatttgattaca |
48713983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 474
Target Start/End: Complemental strand, 48701763 - 48701720
Alignment:
| Q |
431 |
agtggtgatttcaatcttgttggtgggaagttacaagcatcaat |
474 |
Q |
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| T |
48701763 |
agtggtgatttcaatcttcttggtgggaagttacaagcatcaat |
48701720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 480 - 523
Target Start/End: Complemental strand, 48701798 - 48701755
Alignment:
| Q |
480 |
gtgaagctttgtcaaacactagatttaatggtcttagtgatgat |
523 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48701798 |
gtgaagctttgtcaaacactagatttaatggtcttagtggtgat |
48701755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 474
Target Start/End: Complemental strand, 48713869 - 48713826
Alignment:
| Q |
431 |
agtggtgatttcaatcttgttggtgggaagttacaagcatcaat |
474 |
Q |
| |
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| T |
48713869 |
agtggtgatttcaatgttgttggtgggaagttacaagcatcaat |
48713826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 480 - 523
Target Start/End: Complemental strand, 48713904 - 48713861
Alignment:
| Q |
480 |
gtgaagctttgtcaaacactagatttaatggtcttagtgatgat |
523 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48713904 |
gtgaagctttgtcaaacactagatttaatggtcttagtggtgat |
48713861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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