View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15864_high_13 (Length: 473)

Name: NF15864_high_13
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15864_high_13
NF15864_high_13
[»] chr3 (6 HSPs)
chr3 (303-455)||(47669847-47669999)
chr3 (13-157)||(47669101-47669245)
chr3 (13-159)||(12008996-12009142)
chr3 (13-151)||(51985887-51986024)
chr3 (203-280)||(47669736-47669815)
chr3 (182-230)||(12008925-12008973)
[»] chr8 (3 HSPs)
chr8 (13-157)||(34053194-34053338)
chr8 (188-233)||(34053124-34053169)
chr8 (188-232)||(9370108-9370152)
[»] chr7 (3 HSPs)
chr7 (13-148)||(26761474-26761608)
chr7 (252-280)||(7961716-7961744)
chr7 (188-232)||(47817421-47817465)
[»] chr4 (9 HSPs)
chr4 (13-148)||(11882857-11882992)
chr4 (13-139)||(33018498-33018624)
chr4 (19-144)||(35347139-35347264)
chr4 (15-148)||(33432814-33432946)
chr4 (182-232)||(11883016-11883066)
chr4 (182-232)||(33018664-33018714)
chr4 (187-229)||(35347300-35347342)
chr4 (187-232)||(33432740-33432785)
chr4 (188-232)||(23669252-23669296)
[»] chr6 (2 HSPs)
chr6 (13-148)||(6535137-6535272)
chr6 (182-231)||(6535301-6535350)
[»] chr1 (4 HSPs)
chr1 (13-148)||(47124700-47124835)
chr1 (14-151)||(7298525-7298662)
chr1 (182-232)||(7298693-7298743)
chr1 (191-227)||(6815261-6815297)
[»] chr5 (2 HSPs)
chr5 (37-148)||(43070065-43070176)
chr5 (182-232)||(43070209-43070259)
[»] chr2 (1 HSPs)
chr2 (191-228)||(11873280-11873317)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 303 - 455
Target Start/End: Original strand, 47669847 - 47669999
Alignment:
Q  303 ctctcataagtgccccgcttttttatgattagcacacatttagattaatccttatcttatttgaagtatgctaatgaatattttacagcactccaatttg 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47669847 ctctcataagtgccccgcttttttatgattagcacacatttagattgatccttatcttatttgaagtatgctaatgaatattttacagcactccaattta 47669946  T
Q  403 taaatgatttgacatacattaatcctgtaggttcatacaccgtagacattctt 455  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47669947 taaatgatttgacatacattaatcctgtaagttcatacaccgtagacattctt 47669999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 47669101 - 47669245
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47669101 gcaaagggagaataaacagagaggaatatgagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttga 47669200  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaatgtgagaag 157  Q
    ||| |||||||||||||||||||||||||||||||||||||||||    
T  47669201 tctctggtgtgtttaaccaatctaacggttaggaaatgtgagaag 47669245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 12009142 - 12008996
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  12009142 gcaaagggagaataaacagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaatataatcaagtgtatttga 12009043  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaatgtgagaagat 159  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||    
T  12009042 tctatggtgtgtttaaccaatctaacggttagaaaatgtcagaagat 12008996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 51986024 - 51985887
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  51986024 gcaaagggagaataaacagagaggtatat-agagaaaggtgaaagctcatgagagttgagaggaaagaagacaaatgaaaagataatcaagtgtatttga 51985926  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaatgt 151  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  51985925 tctatggtatgtttaaccaatctaacggttaggaaatgt 51985887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 47669736 - 47669815
Alignment:
Q  203 cctataaaggtctcccaccctagacgccgc-ttgatccatattccattcaacgg-tcctgttcttctttagaatacaaaa 280  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||||||||||||    
T  47669736 cctataaaggtcttccaccctagacgccgccttggtccatattctattcaacgggtcctgttcttctttagaatacaaaa 47669815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 12008973 - 12008925
Alignment:
Q  182 gaggccatgcacggtaggatacctataaaggtctcccaccctagacgcc 230  Q
    |||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  12008973 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgcc 12008925  T

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Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 34053338 - 34053194
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34053338 gcaaagggagaataaacagagagggatatcagagaaaggtaaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttga 34053239  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaatgtgagaag 157  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  34053238 tctatggtgtgtttaaccaatctaacggttaggaaatgtcagaag 34053194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 34053169 - 34053124
Alignment:
Q  188 atgcacggtaggatacctataaaggtctcccaccctagacgccgct 233  Q
    ||||| ||||||| |||||||||||| |||||||||| ||||||||    
T  34053169 atgcatggtaggagacctataaaggtttcccaccctacacgccgct 34053124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 9370108 - 9370152
Alignment:
Q  188 atgcacggtaggatacctataaaggtctcccaccctagacgccgc 232  Q
    |||||| |||||| |||||| ||||||||||||||||||| ||||    
T  9370108 atgcaccgtaggagacctattaaggtctcccaccctagacaccgc 9370152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 26761608 - 26761474
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26761608 gcaaagggagaataaacagagagggatat-agagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttga 26761510  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaa 148  Q
    ||||||||||||||||||||||||||||||||||||    
T  26761509 tctatggtgtgtttaaccaatctaacggttaggaaa 26761474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 7961744 - 7961716
Alignment:
Q  252 acggtcctgttcttctttagaatacaaaa 280  Q
    |||||||||||||||||||||||||||||    
T  7961744 acggtcctgttcttctttagaatacaaaa 7961716  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 47817465 - 47817421
Alignment:
Q  188 atgcacggtaggatacctataaaggtctcccaccctagacgccgc 232  Q
    |||||| |||||| |||||| ||||||||||||||||||| ||||    
T  47817465 atgcaccgtaggagacctattaaggtctcccaccctagacaccgc 47817421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 11882857 - 11882992
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11882857 gcaaagggaaaataaacagagagggatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttga 11882956  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaa 148  Q
    ||||||||||||| ||||||||||||||||||||||    
T  11882957 tctatggtgtgttcaaccaatctaacggttaggaaa 11882992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 33018498 - 33018624
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    ||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33018498 gcaaagggaaaataaacagagagggatatcaaagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttga 33018597  T
Q  113 tctatggtgtgtttaaccaatctaacg 139  Q
    |||||| |||||| |||||||||||||    
T  33018598 tctatgatgtgttcaaccaatctaacg 33018624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 35347139 - 35347264
Alignment:
Q  19 ggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttgatctatg 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||    
T  35347139 ggagaataaacagagagggatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaaaataatcaagtgtattcgatctatg 35347238  T
Q  119 gtgtgtttaaccaatctaacggttag 144  Q
     |||||||||| ||| ||||||||||    
T  35347239 atgtgtttaactaatttaacggttag 35347264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 33432946 - 33432814
Alignment:
Q  15 aaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttgatc 114  Q
    ||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||  | ||||||| |||    
T  33432946 aaagggaaaataaacagagagggatat-agagaaaggggaaagctcatgagagttgagagggaagaagacaaatgaaaagataattcagtgtatttaatc 33432848  T
Q  115 tatggtgtgtttaaccaatctaacggttaggaaa 148  Q
    ||||||||||| ||||||||||||  ||||||||    
T  33432847 tatggtgtgttcaaccaatctaactattaggaaa 33432814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 11883016 - 11883066
Alignment:
Q  182 gaggccatgcacggtaggatacctataaaggtctcccaccctagacgccgc 232  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  11883016 gaggccatgcacggtaggagacctataaaggtctcccaccctaaacgccgc 11883066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 33018664 - 33018714
Alignment:
Q  182 gaggccatgcacggtaggatacctataaaggtctcccaccctagacgccgc 232  Q
    |||| |||||||||||||| ||||||||||||||||||||||| |||||||    
T  33018664 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgc 33018714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 35347300 - 35347342
Alignment:
Q  187 catgcacggtaggatacctataaaggtctcccaccctagacgc 229  Q
    |||||||||||||  ||||||||||||||||||||||||||||    
T  35347300 catgcacggtaggggacctataaaggtctcccaccctagacgc 35347342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 33432785 - 33432740
Alignment:
Q  187 catgcacggtaggatacctataaaggtctcccaccctagacgccgc 232  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||    
T  33432785 catgcacggtaggagatctataaaggtctcccaccctaaacgccgc 33432740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 23669252 - 23669296
Alignment:
Q  188 atgcacggtaggatacctataaaggtctcccaccctagacgccgc 232  Q
    |||||| |||||| |||||| ||||||||||||||||||| ||||    
T  23669252 atgcaccgtaggagacctattaaggtctcccaccctagacaccgc 23669296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 6535137 - 6535272
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6535137 gcaaagggaaaataaacagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 6535236  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaa 148  Q
    ||| ||||||||| || |||||||||| ||||||||    
T  6535237 tctgtggtgtgttcaatcaatctaacgattaggaaa 6535272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 6535301 - 6535350
Alignment:
Q  182 gaggccatgcacggtaggatacctataaaggtctcccaccctagacgccg 231  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  6535301 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 6535350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 47124835 - 47124700
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    |||||| || ||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  47124835 gcaaagagaaaataaacagagagggatattagagaaaggtaaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaggtgtatttga 47124736  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaa 148  Q
    ||||||||||||| ||||||||||||||||||||||    
T  47124735 tctatggtgtgttcaaccaatctaacggttaggaaa 47124700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 7298525 - 7298662
Alignment:
Q  14 caaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttgat 113  Q
    |||| |||||| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||||||||||    
T  7298525 caaaaggagaaaaaacagagagggatattagagaaaggtgaaagctcatgagagttgagaaggaagaagacaaaggaaaatataattaagtgtatttgat 7298624  T
Q  114 ctatggtgtgtttaaccaatctaacggttaggaaatgt 151  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7298625 ctatggtgtgtttaaccaatctaacggttaggaaatgt 7298662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 7298693 - 7298743
Alignment:
Q  182 gaggccatgcacggtaggatacctataaaggtctcccaccctagacgccgc 232  Q
    |||| |||||||||||||| ||||||| |||||||| |||||| |||||||    
T  7298693 gaggtcatgcacggtaggagacctatataggtctcctaccctaaacgccgc 7298743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 6815297 - 6815261
Alignment:
Q  191 cacggtaggatacctataaaggtctcccaccctagac 227  Q
    |||||||||| |||||| |||||||||||||||||||    
T  6815297 cacggtaggagacctatcaaggtctcccaccctagac 6815261  T

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Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 43070065 - 43070176
Alignment:
Q  37 gatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttgatctatggtgtgtttaaccaatcta 136  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  43070065 gatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatgatgtgtttaaccaatcta 43070164  T
Q  137 acggttaggaaa 148  Q
    ||||||||||||    
T  43070165 acggttaggaaa 43070176  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 43070209 - 43070259
Alignment:
Q  182 gaggccatgcacggtaggatacctataaaggtctcccaccctagacgccgc 232  Q
    |||| |||| ||||||||| ||||||||||||||||||||||| |||||||    
T  43070209 gaggtcatgtacggtaggagacctataaaggtctcccaccctaaacgccgc 43070259  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 11873317 - 11873280
Alignment:
Q  191 cacggtaggatacctataaaggtctcccaccctagacg 228  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  11873317 cacggtaggagacctatcaaggtctcccaccctagacg 11873280  T

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