View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_high_16 (Length: 462)
Name: NF15864_high_16
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_high_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 11 - 462
Target Start/End: Original strand, 44572731 - 44573182
Alignment:
| Q |
11 |
atcatcaatcaacttcctaccttcttcaaccttcccaacatcacacaaacccttcaccacaatcgcaatactataattatcaacaaccaaatccaaacca |
110 |
Q |
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| T |
44572731 |
atcatcaatcaacttcctaccttcttcaaccttcccaacatcacacaaacccttcaccacaatcacaatactataattatcaacaaccaaatccaaacca |
44572830 |
T |
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| Q |
111 |
tgatccccaccccgctcaagcattttatcatacagttcgcaggcaacatcaactttcccatttttcaccaaacaattaagcaaagaattattagcaacaa |
210 |
Q |
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| T |
44572831 |
tgatcaccaccccgctcaagcattttatcatacagttcgcaggcaacatcaactttcccatttttcaccaaacaattaagcaaagaattattagcaacaa |
44572930 |
T |
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| Q |
211 |
cacatggaaaacaattatacaattcacaaaccatataaaacatcttcactgctttatcaacaaacccatattcagcataaacacaaataacactattcaa |
310 |
Q |
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| T |
44572931 |
cacatggaaaacaattatacaattcacaaaccatataaaacatcttcactgctttatcaacaaacccatattcagcataaacacaaataacactattcaa |
44573030 |
T |
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| Q |
311 |
tgcttcaagcgtaggtttaaagtttcgatttttcatatcctccaacacaatttcaatctcggaaaacactctatacttaaccataagcttgagaagtgaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
44573031 |
tgcttcaagcgtaggtttaaagtttcgatttttcatatcctccaacacaatttcaatctcggaaaacaatctatactttaccataagcttgagaagtgaa |
44573130 |
T |
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| Q |
411 |
gaataagcaacattattgagaggagaagaaaagggtaatgtggaagcccagt |
462 |
Q |
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| T |
44573131 |
gaataagcaacattattgagaggagaagaaaagggtaatgtggaagcccagt |
44573182 |
T |
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