View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15864_high_17 (Length: 461)

Name: NF15864_high_17
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15864_high_17
NF15864_high_17
[»] chr2 (12 HSPs)
chr2 (20-267)||(37559321-37559567)
chr2 (183-262)||(8884443-8884522)
chr2 (187-266)||(36772393-36772472)
chr2 (187-266)||(36793507-36793586)
chr2 (187-262)||(34643003-34643078)
chr2 (187-261)||(36756170-36756244)
chr2 (188-262)||(3197568-3197642)
chr2 (187-261)||(4713110-4713184)
chr2 (187-261)||(24359791-24359865)
chr2 (187-261)||(39082468-39082542)
chr2 (187-261)||(42968150-42968224)
chr2 (281-318)||(37559265-37559302)
[»] chr5 (2 HSPs)
chr5 (186-262)||(2626071-2626147)
chr5 (349-381)||(40152935-40152967)
[»] chr8 (7 HSPs)
chr8 (186-261)||(24864607-24864682)
chr8 (187-261)||(38085946-38086020)
chr8 (186-262)||(7895152-7895228)
chr8 (188-262)||(44415934-44416008)
chr8 (187-262)||(40866298-40866373)
chr8 (189-267)||(9963280-9963358)
chr8 (188-262)||(42014306-42014380)
[»] chr7 (7 HSPs)
chr7 (187-262)||(30034301-30034376)
chr7 (187-262)||(46075151-46075226)
chr7 (187-261)||(25287960-25288034)
chr7 (189-261)||(34984430-34984502)
chr7 (187-265)||(37022191-37022269)
chr7 (189-262)||(46972138-46972211)
chr7 (347-379)||(27881396-27881428)
[»] chr6 (8 HSPs)
chr6 (187-262)||(7432419-7432494)
chr6 (187-262)||(7441936-7442011)
chr6 (189-263)||(7432981-7433055)
chr6 (186-262)||(7425624-7425700)
chr6 (186-262)||(3992806-3992882)
chr6 (186-250)||(7414596-7414660)
chr6 (186-262)||(7418533-7418609)
chr6 (187-251)||(7420519-7420583)
[»] chr4 (8 HSPs)
chr4 (188-263)||(4690133-4690208)
chr4 (187-262)||(31553694-31553769)
chr4 (186-261)||(33871041-33871116)
chr4 (186-262)||(6067668-6067744)
chr4 (187-262)||(50968245-50968320)
chr4 (188-261)||(34505290-34505363)
chr4 (188-261)||(52818059-52818132)
chr4 (186-268)||(6071144-6071225)
[»] chr3 (9 HSPs)
chr3 (186-261)||(11580202-11580277)
chr3 (184-261)||(35679467-35679544)
chr3 (187-261)||(35687869-35687943)
chr3 (187-261)||(52638656-52638730)
chr3 (187-261)||(35692217-35692291)
chr3 (187-261)||(29618312-29618386)
chr3 (187-261)||(41552100-41552174)
chr3 (189-261)||(1488013-1488085)
chr3 (189-261)||(2031252-2031324)
[»] chr1 (10 HSPs)
chr1 (187-261)||(37369512-37369586)
chr1 (189-267)||(23058047-23058125)
chr1 (189-267)||(23057675-23057753)
chr1 (189-267)||(23057860-23057938)
chr1 (189-267)||(23061976-23062054)
chr1 (189-266)||(43065996-43066078)
chr1 (178-262)||(30320744-30320830)
chr1 (187-262)||(30340910-30340985)
chr1 (194-248)||(23057567-23057621)
chr1 (194-248)||(23061868-23061922)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 37559567 - 37559321
Alignment:
Q  20 gatcaaaagattggtttatgtattttaaagagcaattgcaaggtttgtatttgatgagtaaaggaaggaacaggtagaaagattcgtacctgaagcatat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||  |||||  |||||||||||||||||||||||||    
T  37559567 gatcaaaagattggtttatgtattttaaagagcaattgcaaggtttgtatttgatgagctaaggaaa-aacagacagaaagattcgtacctgaagcatat 37559469  T
Q  120 c-tacattttcagtcttgcatattatttagaatgcgatatgtaaattaaagggtgattgaaattaacaa-tggggatgtagctcagatggtagagcgctc 217  Q
    | | |||||||||||  |||||||||||||| ||| ||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||    
T  37559468 cctgcattttcagtc--gcatattatttagagtgcaatatgtaaaataaagggtgattgaaatcaataaatggggatgtagctcagatggtagagcgctc 37559371  T
Q  218 gcttagcatgcgagaggtacggggatcgataccccgcatctccataattt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37559370 gcttagcatgcgagaggtacggggatcgataccccgcatctccataattt 37559321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 8884443 - 8884522
Alignment:
Q  183 aacaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8884443 aacaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 8884522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 36772472 - 36772393
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataatt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36772472 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataatt 36772393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 36793586 - 36793507
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataatt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36793586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataatt 36793507  T

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Target: chr2; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 34643078 - 34643003
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34643078 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 34643003  T

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Target: chr2; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 36756244 - 36756170
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36756244 atggggatgtagctcagatggtagagtgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 36756170  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 3197568 - 3197642
Alignment:
Q  188 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| |||||| | ||| ||||||||||||||    
T  3197568 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggtttgatcccccgcatctccat 3197642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 4713184 - 4713110
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||    
T  4713184 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 4713110  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 24359791 - 24359865
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||    
T  24359791 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 24359865  T

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Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 39082468 - 39082542
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||    
T  39082468 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 39082542  T

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Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 42968150 - 42968224
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||| ||||||||| |||||||||    
T  42968150 atggggatgtagctcaaatggtagagcgcttgctttgcatgcgagaggtacagggttcgataccctgcatctcca 42968224  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 37559302 - 37559265
Alignment:
Q  281 gttctttctttctcatgaaattcggatgtggcaacttt 318  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37559302 gttctttctttctcatgaaattcggatgtggcaacttt 37559265  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 2626147 - 2626071
Alignment:
Q  186 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2626147 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 2626071  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 40152935 - 40152967
Alignment:
Q  349 taaaaacttatttatttgtataaattgttttag 381  Q
    ||||||||||||||||| |||||||||||||||    
T  40152935 taaaaacttatttatttatataaattgttttag 40152967  T

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Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 24864607 - 24864682
Alignment:
Q  186 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24864607 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 24864682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 38085946 - 38086020
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38085946 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 38086020  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 7895228 - 7895152
Alignment:
Q  186 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  7895228 aatggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 7895152  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 44415934 - 44416008
Alignment:
Q  188 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  44415934 tggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 44416008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 40866373 - 40866298
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  40866373 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 40866298  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 9963358 - 9963280
Alignment:
Q  189 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataattt 267  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||||||||    
T  9963358 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccataattt 9963280  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 42014306 - 42014380
Alignment:
Q  188 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||    
T  42014306 tgggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 42014380  T

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Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 30034301 - 30034376
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034301 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 30034376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 46075226 - 46075151
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46075226 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 46075151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 25287960 - 25288034
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25287960 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 25288034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 34984502 - 34984430
Alignment:
Q  189 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34984502 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 34984430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 37022269 - 37022191
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataat 265  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37022269 atggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccataat 37022191  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 46972211 - 46972138
Alignment:
Q  189 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||| |||||||    
T  46972211 ggggacgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcgtctccat 46972138  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 27881396 - 27881428
Alignment:
Q  347 cttaaaaacttatttatttgtataaattgtttt 379  Q
    |||||||||||||||||||||||||||| ||||    
T  27881396 cttaaaaacttatttatttgtataaattatttt 27881428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 7432494 - 7432419
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7432494 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 7432419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 7442011 - 7441936
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7442011 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcaactccat 7441936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 7433055 - 7432981
Alignment:
Q  189 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 263  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7433055 ggggatgtagctcagatggtagagcgctcgcttagcatgcaagaggtacggggatcgataccccgcatctccata 7432981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 7425700 - 7425624
Alignment:
Q  186 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  7425700 aatggggatgtagctcagatggtagagcgctcgcttagcatgtgagaggtacggggattgataccccgcatctccat 7425624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 3992882 - 3992806
Alignment:
Q  186 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  3992882 aatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 3992806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 7414660 - 7414596
Alignment:
Q  186 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgatacc 250  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  7414660 aatggggatgtagcttagatggtagagcgctcgcttagcatgtgagaggtatggggatcgatacc 7414596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 7418609 - 7418533
Alignment:
Q  186 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||| |||||||| |||||||| |||||||||    
T  7418609 aatggggatgtagctcagatggtatagtgctcgcttagcatgtgagagggacggggattgataccccacatctccat 7418533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 7420583 - 7420519
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccc 251  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  7420583 atggagatgtggatcagatggtagagtgctcgcttagcatgcgagaggtatgcggatcgataccc 7420519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 4690208 - 4690133
Alignment:
Q  188 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4690208 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 4690133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 31553694 - 31553769
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31553694 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 31553769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 33871116 - 33871041
Alignment:
Q  186 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33871116 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 33871041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 6067668 - 6067744
Alignment:
Q  186 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||||    
T  6067668 aatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgataccctgcatctccat 6067744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 50968320 - 50968245
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  50968320 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 50968245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 34505290 - 34505363
Alignment:
Q  188 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||    
T  34505290 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 34505363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 52818059 - 52818132
Alignment:
Q  188 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    ||||||||||||||| |||||||||||| ||||| ||||||| ||||||| ||| ||||||||| |||||||||    
T  52818059 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctcca 52818132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 6071144 - 6071225
Alignment:
Q  186 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataattta 268  Q
    ||||||||||||||||| ||||||||||||| |||| |||||| |||||| | ||| | ||| ||||||||||||| ||||||    
T  6071144 aatggggatgtagctcaaatggtagagcgcttgctttgcatgcaagaggttcagggtttgat-ccccgcatctccaaaattta 6071225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 11580202 - 11580277
Alignment:
Q  186 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11580202 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 11580277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 35679467 - 35679544
Alignment:
Q  184 acaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35679467 acaaaggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 35679544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 35687869 - 35687943
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35687869 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtatggggatcgataccccgcatctcca 35687943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 52638730 - 52638656
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  52638730 atggggatgtagctcaaatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccatgcatctcca 52638656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 35692217 - 35692291
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||| |||||||||    
T  35692217 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtatagggattgataccctgcatctcca 35692291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 29618312 - 29618386
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  29618312 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 29618386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 41552100 - 41552174
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  41552100 atggggttgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcagctcca 41552174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 1488013 - 1488085
Alignment:
Q  189 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  1488013 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 1488085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 2031252 - 2031324
Alignment:
Q  189 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  2031252 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 2031324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 37369586 - 37369512
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37369586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 37369512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 23058125 - 23058047
Alignment:
Q  189 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataattt 267  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  23058125 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccattattt 23058047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 23057753 - 23057675
Alignment:
Q  189 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataattt 267  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||| ||||    
T  23057753 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccattattt 23057675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 23057938 - 23057860
Alignment:
Q  189 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataattt 267  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| ||||    
T  23057938 gggggtgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccctgcatctccattattt 23057860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 23062054 - 23061976
Alignment:
Q  189 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataattt 267  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||| ||||    
T  23062054 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccattattt 23061976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 43065996 - 43066078
Alignment:
Q  189 ggggatgtagctcagatggtagagcgctcgc-----ttagcatgcgagaggtacggggatcgataccccgcatctccataatt 266  Q
    |||||||||||||| ||||||||||||||||     |||||||||||||||||||||| ||||||||||||||||||||||||    
T  43065996 ggggatgtagctcatatggtagagcgctcgcatcacttagcatgcgagaggtacggggctcgataccccgcatctccataatt 43066078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 30320830 - 30320744
Alignment:
Q  178 aaattaacaa--tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    ||||||||||  ||||||||||||||| |||||||||||| ||||| ||||||| ||||||| ||| ||||||||| ||||||||||    
T  30320830 aaattaacaacttggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctccat 30320744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 30340985 - 30340910
Alignment:
Q  187 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 262  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| | ||| ||| ||||||||||    
T  30340985 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggtttgatcccctgcatctccat 30340910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 23057621 - 23057567
Alignment:
Q  194 tgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgata 248  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||    
T  23057621 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgata 23057567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 23061922 - 23061868
Alignment:
Q  194 tgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgata 248  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||    
T  23061922 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgata 23061868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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