View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_high_19 (Length: 398)
Name: NF15864_high_19
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 20488777 - 20489146
Alignment:
| Q |
20 |
gaggaggagtttttgtgtaggaccagcatgatgtgaatatatgcattaagtacttacacttcacatcgaaggagtgtctagtgtccgacacataggagtg |
119 |
Q |
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| T |
20488777 |
gaggaggagtttttgtgtaggaccagaatgatgtgaatatatgcattaagtacttacacttcacatcgaaggtgtgtctagtgtccgacacataagagtg |
20488876 |
T |
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| Q |
120 |
tccaatacgcacacgatattgttggttacannnnnnnnn--gacaaccaatattggttacattcaatcacatctactttgacatggatatgacactgaaa |
217 |
Q |
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| T |
20488877 |
tccaatacccacatgatattggtggttacatttttttttttgacaaccaatattggttacattcaatcacatctactttgacacagatatgacactgaaa |
20488976 |
T |
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| Q |
218 |
ttgacacgtcgacatcaatcataatttgataaaatgaattactagaatgtaatcacatgtgtcagtcttcgataccaacacatgttaaacactggacacg |
317 |
Q |
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| T |
20488977 |
ttgacacgtcgacatcaatcattatttgataaaatgaattaatctaatgtaatgatttgtgtcggtgttcaataccaacatatggtgaacactggacacg |
20489076 |
T |
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| Q |
318 |
ccttcaataacaactgtaggtgctacagagctacatatgcctacgtattgtgtctgtgtccggtgttcat |
387 |
Q |
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| T |
20489077 |
ccttcaataacaactgtagatgcaacagagctacatatgtctacgtattgtgtctgtgtccggtgctcat |
20489146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 9878100 - 9878036
Alignment:
| Q |
219 |
tgacacgtcgacatcaatcataatttgataaaatgaattactagaatgtaatcacatgtgtcagt |
283 |
Q |
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| T |
9878100 |
tgacacgtcgacaccaataataatttgagaatatgaattaattgaatgtaatcacttgtgtcagt |
9878036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 28322234 - 28322292
Alignment:
| Q |
221 |
acacgtcgacatcaatcataatttgataaaatgaattactagaatgtaatcacatgtgt |
279 |
Q |
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| T |
28322234 |
acacgtcgacactagtgataatttgagaaaatgaattaattgaatgtaatcacatgtgt |
28322292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 283
Target Start/End: Complemental strand, 18262869 - 18262787
Alignment:
| Q |
202 |
ggatatgacactgaaattgacacgtcgacatcaatcataatttgataaaat-gaattactagaatgtaatcacatgtgtcagt |
283 |
Q |
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| T |
18262869 |
ggatataacactcacattgacatatcaacaccaataataatttgataaaattgaattaattgaaagtaatcacatgtgtcagt |
18262787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 34625719 - 34625781
Alignment:
| Q |
213 |
tgaaattgacacgtcgacatcaatcataatttgataaaatgaattactagaatgtaatcacat |
275 |
Q |
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| T |
34625719 |
tgaaattgatacatcgacaccgataataatttgagaaaatgaattaattgaatgtaatcacat |
34625781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 28524544 - 28524491
Alignment:
| Q |
227 |
cgacatcaatcataatttgataaaatgaattactagaatgtaatcacatgtgtc |
280 |
Q |
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| T |
28524544 |
cgacatcagtaataatttgaaaaaatgaaatgatagaatgtaatcacatgtgtc |
28524491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 47040298 - 47040238
Alignment:
| Q |
220 |
gacacgtcgacatcaatcataatttgataaaatgaattactagaatgtaatcacatgtgtc |
280 |
Q |
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| T |
47040298 |
gacacgtcgacaccaatgataatttgagaaaatgaattaactggatataatcacatgtgtc |
47040238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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