View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15864_high_21 (Length: 390)

Name: NF15864_high_21
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15864_high_21
NF15864_high_21
[»] chr7 (3 HSPs)
chr7 (18-227)||(11608650-11608859)
chr7 (334-383)||(11609797-11609846)
chr7 (149-220)||(11739521-11739593)
[»] chr1 (9 HSPs)
chr1 (149-225)||(10751554-10751630)
chr1 (149-225)||(1615986-1616062)
chr1 (149-225)||(31583991-31584067)
chr1 (187-227)||(33439324-33439364)
chr1 (172-223)||(34488605-34488656)
chr1 (148-218)||(35896497-35896568)
chr1 (149-198)||(43281119-43281168)
chr1 (148-223)||(1634895-1634971)
chr1 (149-225)||(14580308-14580384)
[»] scaffold0329 (1 HSPs)
scaffold0329 (149-227)||(4699-4777)
[»] chr3 (5 HSPs)
chr3 (148-225)||(9796570-9796647)
chr3 (148-227)||(4767318-4767396)
chr3 (148-227)||(9828931-9829010)
chr3 (148-229)||(17637129-17637210)
chr3 (149-210)||(31375636-31375697)
[»] chr2 (3 HSPs)
chr2 (148-227)||(18038731-18038811)
chr2 (18-108)||(26292458-26292548)
chr2 (335-379)||(26879016-26879060)
[»] chr8 (3 HSPs)
chr8 (144-198)||(19711324-19711378)
chr8 (180-227)||(24502376-24502423)
chr8 (149-227)||(18527743-18527821)
[»] chr5 (2 HSPs)
chr5 (149-227)||(37390644-37390722)
chr5 (149-225)||(25770610-25770685)
[»] chr4 (4 HSPs)
chr4 (149-227)||(20245760-20245838)
chr4 (149-227)||(20896752-20896829)
chr4 (149-225)||(11701008-11701084)
chr4 (331-379)||(14711632-14711680)
[»] scaffold0003 (1 HSPs)
scaffold0003 (148-225)||(319030-319107)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 11608650 - 11608859
Alignment:
Q  18 gagataaaggttatatttaagtgaggaattcttgggattgttacgtcccttcagttgtcaagttgcacttgcttgtctcaataacgttatacactcaata 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||    
T  11608650 gagataaaggctatatttaagtgaggaattcttgggattgttacgtcccttcagttgtcaagttgcacttgcttgtctcaataatgttatacatccaata 11608749  T
Q  118 tggtataaggtcgtcgatcctatatggatcatgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaat 217  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  11608750 tggtataaggtcgtcaatcctatatgggtcatgttgaaacaaaatgggttttgtacgatgtctctgatgttttgatgataattaggtattaaagaacaat 11608849  T
Q  218 tagatatgct 227  Q
    ||||||||||    
T  11608850 tagatatgct 11608859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 334 - 383
Target Start/End: Original strand, 11609797 - 11609846
Alignment:
Q  334 atcttgtgtttttctcatcttcattttgtatcagagcatggtctgtgctc 383  Q
    ||||||||||||||||| |||||||| ||||||||||||||| |||||||    
T  11609797 atcttgtgtttttctcaccttcatttggtatcagagcatggtatgtgctc 11609846  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 11739521 - 11739593
Alignment:
Q  149 tgttgaaacaaaatgggtttt-gtacaatgtatctaatgttttgatgataattaggtattaaagaacaattag 220  Q
    ||||||| ||||| ||||||| | ||||||| |||||||||||||||||||  |  ||| |||||||||||||    
T  11739521 tgttgaaccaaaaagggttttagaacaatgtttctaatgttttgatgataacaacatatgaaagaacaattag 11739593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 10751630 - 10751554
Alignment:
Q  149 tgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatg 225  Q
    ||||||||||||||  | |||||||||||| ||||| |||||||||||||  | |||||||||||||||| ||||||    
T  10751630 tgttgaaacaaaatttgatttgtacaatgtctctaaagttttgatgataacaaagtattaaagaacaattggatatg 10751554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 1615986 - 1616062
Alignment:
Q  149 tgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatg 225  Q
    ||||||| ||||||| |||||| |||||| |||| | |||||||| ||||  | |||| ||||||||||||||||||    
T  1615986 tgttgaaccaaaatgagttttgaacaatgcatctgaagttttgataataacaaagtataaaagaacaattagatatg 1616062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 31583991 - 31584067
Alignment:
Q  149 tgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatg 225  Q
    ||||| |||||||| ||||||||||||||  ||| |||||||||||||||  | ||||| ||||| |||| ||||||    
T  31583991 tgttggaacaaaattggttttgtacaatgcctctgatgttttgatgataacaaagtattgaagaataattggatatg 31584067  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 33439364 - 33439324
Alignment:
Q  187 ttttgatgataattaggtattaaagaacaattagatatgct 227  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  33439364 ttttgatgataacaaggtattaaagaacaattagatatgct 33439324  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 34488656 - 34488605
Alignment:
Q  172 acaatgtatctaatgttttgatgataattaggtattaaagaacaattagata 223  Q
    ||||||||||||  |||||||||||||| |||||| ||||||||||| ||||    
T  34488656 acaatgtatctagagttttgatgataataaggtatgaaagaacaatttgata 34488605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 35896568 - 35896497
Alignment:
Q  148 atgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtatt-aaagaacaatt 218  Q
    |||||||| |||||| ||||||||| ||||||||| | |||||||||||||  | ||||| |||||||||||    
T  35896568 atgttgaaccaaaataggttttgtataatgtatctgaagttttgatgataagaaagtattaaaagaacaatt 35896497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 43281119 - 43281168
Alignment:
Q  149 tgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataa 198  Q
    |||||||||||||| | ||||| ||||||| ||||| |||||||||||||    
T  43281119 tgttgaaacaaaatagattttgcacaatgtctctaaagttttgatgataa 43281168  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 1634895 - 1634971
Alignment:
Q  148 atgttgaaacaaaatggg-ttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagata 223  Q
    |||||||| ||||||||| ||||||||||||| || |  |||||||||||||| |||||| |  |||||||| ||||    
T  1634895 atgttgaatcaaaatggggttttgtacaatgtctccagagttttgatgataataaggtataagtgaacaattggata 1634971  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 14580308 - 14580384
Alignment:
Q  149 tgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatg 225  Q
    ||||| |||||||| || ||||| |||||  | |||  ||||||||||||  | |||||||||||||||||||||||    
T  14580308 tgttggaacaaaattggatttgtccaatgcctttaaaattttgatgataacaaagtattaaagaacaattagatatg 14580384  T

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Target: scaffold0329 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 4777 - 4699
Alignment:
Q  149 tgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatgct 227  Q
    ||||||||||||||||||||||||||||   ||||| ||||||||||||   ||||| |||| ||||||| ||||||||    
T  4777 tgttgaaacaaaatgggttttgtacaatacctctaaagttttgatgatatcaaggtagtaaaaaacaattggatatgct 4699  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 9796647 - 9796570
Alignment:
Q  148 atgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatg 225  Q
    |||||| |||||||| | ||||||||||| | ||| | |||||||||||||| | |||||||||||||||| ||||||    
T  9796647 atgttggaacaaaattgattttgtacaatttctctgaagttttgatgataataaagtattaaagaacaattggatatg 9796570  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 4767318 - 4767396
Alignment:
Q  148 atgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatgct 227  Q
    ||||||||||||||| ||||| |||||||   ||||| |||||||||||||  | ||||||||||| |||||||||||||    
T  4767318 atgttgaaacaaaattggttt-gtacaattcctctaaggttttgatgataacaaagtattaaagaataattagatatgct 4767396  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 9828931 - 9829010
Alignment:
Q  148 atgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatgct 227  Q
    ||||| || ||||||| |||||| |||||||  |||| |||||||||||||  | |||| ||||||||||||||||||||    
T  9828931 atgtttaaccaaaatgagttttgaacaatgtccctaaagttttgatgataacaatgtataaaagaacaattagatatgct 9829010  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 17637129 - 17637210
Alignment:
Q  148 atgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatgctga 229  Q
    |||||| |||||||| |||||||||||||   |||| ||||||||||||||  |  || |||||||||||| ||||||||||    
T  17637129 atgttggaacaaaattggttttgtacaattcctctagtgttttgatgataacaaattagtaaagaacaattggatatgctga 17637210  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 31375697 - 31375636
Alignment:
Q  149 tgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaa 210  Q
    ||||||| ||||||||||||||||| |||  ||| | |||||||||||||  ||||||||||    
T  31375697 tgttgaatcaaaatgggttttgtaccatgcctctgaagttttgatgataacaaggtattaaa 31375636  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 18038811 - 18038731
Alignment:
Q  148 atgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtatt-aaagaacaattagatatgct 227  Q
    ||||||||||||||| ||||||||||||||  ||| | ||||| |||||||  ||||||| ||||||||||| ||||||||    
T  18038811 atgttgaaacaaaataggttttgtacaatgcctcttaggttttaatgataacaaggtattaaaagaacaattggatatgct 18038731  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 26292548 - 26292458
Alignment:
Q  18 gagataaaggttatatttaagtgaggaattcttgggattgttacgtcccttcagttgtcaagttgcacttgcttgtctcaataacgttata 108  Q
    |||| ||||||| |||||| |||| |||||| ||||| | |||||||||| ||  ||||||||||||| ||||  || |||||| ||||||    
T  26292548 gagacaaaggttttatttacgtgatgaattcatgggagttttacgtccctccacctgtcaagttgcacctgctgatcacaataaggttata 26292458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 26879060 - 26879016
Alignment:
Q  335 tcttgtgtttttctcatcttcattttgtatcagagcatggtctgt 379  Q
    |||||||||||||||||||||| || |||||||||| || |||||    
T  26879060 tcttgtgtttttctcatcttcaattggtatcagagcttgctctgt 26879016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 19711324 - 19711378
Alignment:
Q  144 gatcatgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataa 198  Q
    ||||||||||||||||||||| ||||||||||||| ||||| |||| | ||||||    
T  19711324 gatcatgttgaaacaaaatggattttgtacaatgtctctaaagtttcgctgataa 19711378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 24502376 - 24502423
Alignment:
Q  180 tctaatgttttgatgataattaggtattaaagaacaattagatatgct 227  Q
    ||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  24502376 tctaaagttttgatgataataaagtattaaagaacaattggatatgct 24502423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 18527743 - 18527821
Alignment:
Q  149 tgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatgct 227  Q
    ||||| |||||||| |  ||||||||||   ||||| |||||||| ||||  || ||||||||||||||||||||||||    
T  18527743 tgttggaacaaaattgcatttgtacaatacctctaaagttttgattataacaagatattaaagaacaattagatatgct 18527821  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 37390722 - 37390644
Alignment:
Q  149 tgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatgct 227  Q
    |||||| |||||||||| |||||| ||||| | ||| ||||||||||| || |||||||| ||||||||| | ||||||    
T  37390722 tgttgacacaaaatgggctttgtataatgtctttaaagttttgatgatgataaggtattacagaacaattggttatgct 37390644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 25770685 - 25770610
Alignment:
Q  149 tgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatg 225  Q
    |||||||  ||||||||||||| ||| ||| ||| | |||||||||||||| | | || ||||||||||||||||||    
T  25770685 tgttgaacaaaaatgggttttgcaca-tgtctctgaagttttgatgataataaagcataaaagaacaattagatatg 25770610  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 20245838 - 20245760
Alignment:
Q  149 tgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatgct 227  Q
    ||||| |||||||| || |||||||||||  ||| |||||||||||||||  | ||||| |||||||||| ||||||||    
T  20245838 tgttggaacaaaattggatttgtacaatgcctctgatgttttgatgataacaaagtattgaagaacaattggatatgct 20245760  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 20896752 - 20896829
Alignment:
Q  149 tgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatgct 227  Q
    |||||||||||||| ||||| |||||||   |||||  ||||||||||||| | |||||||||||||||| ||||||||    
T  20896752 tgttgaaacaaaattggttt-gtacaattcctctaagattttgatgataataaagtattaaagaacaattggatatgct 20896829  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 11701084 - 11701008
Alignment:
Q  149 tgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatg 225  Q
    ||||||| |||||||||||||| | ||||| | | |||||||||| ||||  | |||| |||||| |||||||||||    
T  11701084 tgttgaatcaaaatgggttttgaaaaatgtttatgatgttttgataataacaaagtatgaaagaataattagatatg 11701008  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 14711632 - 14711680
Alignment:
Q  331 cccatcttgtgtttttctcatcttcattttgtatcagagcatggtctgt 379  Q
    |||||||||||||||||||| ||||| || |||||||||| || |||||    
T  14711632 cccatcttgtgtttttctcaccttcaattggtatcagagcttgctctgt 14711680  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 319030 - 319107
Alignment:
Q  148 atgttgaaacaaaatgggttttgtacaatgtatctaatgttttgatgataattaggtattaaagaacaattagatatg 225  Q
    ||||||||  ||||||||||||||||||||  | ||| |||||||||||||  | ||||| || ||||||||||||||    
T  319030 atgttgaataaaaatgggttttgtacaatgcctttaaagttttgatgataacaaagtattgaaaaacaattagatatg 319107  T

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