View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15864_high_24 (Length: 380)

Name: NF15864_high_24
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15864_high_24
NF15864_high_24
[»] chr7 (7 HSPs)
chr7 (9-380)||(3685958-3686329)
chr7 (10-209)||(3693725-3693925)
chr7 (28-216)||(3679213-3679409)
chr7 (10-204)||(3675532-3675716)
chr7 (300-380)||(3703297-3703377)
chr7 (310-375)||(3675811-3675877)
chr7 (222-290)||(34676634-34676702)


Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 9 - 380
Target Start/End: Original strand, 3685958 - 3686329
Alignment:
Q  9 tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaact 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3685958 tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttttaacacatacacactgtgatttccgctcattcatgaact 3686057  T
Q  109 atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaatatga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3686058 atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaaaaaaatatga 3686157  T
Q  209 cagttatgttagggagaaaagaaaaaagaaagtggttacttgctagttgctgagtggttttgtgagggagtgaccaagctctagatatcgtcatttctgc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3686158 cagttatgttagggagaaaagaaaaaagaaagtggttacttgctagttgccgagtggttttgtgagggagggaccaagctctagatatcgtcatttctgc 3686257  T
Q  309 taaggcatctagatatggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagat 380  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3686258 caaggcatcaagatatggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagat 3686329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 3693725 - 3693925
Alignment:
Q  10 cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaact 108  Q
    |||||||||| |||||  |||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||     
T  3693725 cgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattggtttcttataacacatacacactgtgatttccgctcattcctgaacc 3693824  T
Q  109 atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaatatga 208  Q
    ||||||  ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||| | ||||||||||||||||||||||    
T  3693825 atacactgcttcttcctttataattacaacacgtatcgattcgggaagatcatgatgaggtgtgtttttgataaacaacagtactagaaataaaatatga 3693924  T
Q  209 c 209  Q
    |    
T  3693925 c 3693925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 216
Target Start/End: Original strand, 3679213 - 3679409
Alignment:
Q  28 aacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcctt 126  Q
    |||||||| |||| |||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| |||    
T  3679213 aacgcatcacgaattgatttggcagcaagtgattggtttcttataacacatacacgctgtgatttccgctcattcctgaactatacactacttctt-ctt 3679311  T
Q  127 tataattaccac----ac---gtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaat-aaaatatgacagttatg 216  Q
     |||||||| ||    ||   ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||||||||    
T  3679312 aataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgaggcatgttcttgataaatagcagtactagaaatgaaaatatgacagttatg 3679409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 3675532 - 3675716
Alignment:
Q  10 cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaacta 109  Q
    |||||||||||||||||||||||||| | |||||||||||   |||||          |||||||| |||   |||| ||||||||||||||  ||||||    
T  3675532 cgaagaatatagatcacgaacgcatcacaaactgatgtggttataagt----------tataacacttacgtgctgtcatttccgctcattccagaacta 3675621  T
Q  110 tacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaat 204  Q
    |||||  ||||||||||||||||||| ||||| ||||||||||||||||| |  |||| |||||||||||||||||| |||||||||||||||||    
T  3675622 tacactgcttcttcctttataattacaacacgaatcgattcgggaagatcatggtgagatgtgttcttgataaatagtagtactagaaataaaat 3675716  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 380
Target Start/End: Original strand, 3703297 - 3703377
Alignment:
Q  300 catttctgctaaggcatctagatatggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagat 380  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||||| ||||||||    
T  3703297 catttttgctaaggcatctagatatggaatttatttgaagtagcttgtaactaagacatgaaatgatgataacaataagat 3703377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 3675811 - 3675877
Alignment:
Q  310 aaggcatctagatatggaatttgtttgaagtaa-cttctaactaagacatgaaacgatgataataat 375  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||    
T  3675811 aaggcatcttgatatggaatttatttgaagtaagcttctaactaagacatgaaatgatgacaataat 3675877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 34676634 - 34676702
Alignment:
Q  222 gagaaaagaaaaaagaaagtggttacttgctagttgctgagtggttttgtgagggagtgaccaagctct 290  Q
    ||||||||||||  ||||||||||| | | |||||  ||||||||| |||||||||| ||| |||||||    
T  34676634 gagaaaagaaaagggaaagtggttattgggtagttcttgagtggttatgtgagggagagacaaagctct 34676702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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