View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_high_26 (Length: 365)
Name: NF15864_high_26
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 43619188 - 43618837
Alignment:
| Q |
1 |
aggagttcgcaggtaaagtcagagagtattccttgttcattaagaaagatgcgccaagtttttacgtcattaaaaggtaccttttgctcgttctctcagg |
100 |
Q |
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| T |
43619188 |
aggagtttgcggataaagtcagagagtattccttgtaccttaaggaagatgcgccaagtgtttgtgttatcgaaaggtaccttttgctcgttctctcagc |
43619089 |
T |
|
| Q |
101 |
aacatacccgaaaccttgcagttgtgtgtgaatttcagtggaacaaaaataaagttataataattttgatggttgaatacatgaatgaaataaagttatt |
200 |
Q |
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| T |
43619088 |
aacatacccgaaaccttgcagttgtgtgtgaatttcagtggaacaaaaataaagttataataattttgatcgttgaatacatgaatgaaataaagttatt |
43618989 |
T |
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| Q |
201 |
cttttgctaaatacatgatattttgttatgttccttgtttaggaagccatctagtggataatttttgcgtactttttcccttttaagaaatttgcaactg |
300 |
Q |
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| T |
43618988 |
cttttgataaatacatgatattttgttatgttccttgtttaggaagccatctagtggataatttttgcgtac--tttcccttttaagaaatttgcaactg |
43618891 |
T |
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| Q |
301 |
aaaattacattgtgtattttatgtttgtgtgcagtttttaacattctttttcat |
354 |
Q |
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| T |
43618890 |
aaaattacattgtgtattttatgtttgtgtgcagtttttaacattctttttcat |
43618837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 43650211 - 43650142
Alignment:
| Q |
15 |
aaagtcagagagtattccttgttcattaagaaagatgcgccaagtttttacgtcattaaaaggtaccttt |
84 |
Q |
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||||||||||| |||| |||||||||||| |||||||||||||| ||| || ||| | |||||||||| |
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| T |
43650211 |
aaagtcagagattatttgttgttcattaaggaagatgcgccaagtgtttgtgttattgagaggtaccttt |
43650142 |
T |
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