View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_high_3 (Length: 612)
Name: NF15864_high_3
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 5 - 593
Target Start/End: Original strand, 41703983 - 41704571
Alignment:
| Q |
5 |
tgtccaataatatatttgttgacttaacatctctatggtaaataggggtgtgtgcagaagaatgcaagtaagccaatgcttcagctgtttgaaaagcaat |
104 |
Q |
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| T |
41703983 |
tgtccaacagtatatttgttgacttaacatctctatggtaaataggggtgtgtgcagaagaatgcaagtaagccaatgcttcagctgtttgaaaagcaat |
41704082 |
T |
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| Q |
105 |
cttaagccnnnnnnnccagtcaagaaaatttggatatctaccatgaatatggtcatagagggtcccatttgagatatactcatagatcatcaaaggctgc |
204 |
Q |
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| T |
41704083 |
cttaagcctttttttccagtcaagaaaatttggatatctaccatgaatatggtcatagagggtcccatttgagatatactcatagatcatcaaaggctgc |
41704182 |
T |
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| Q |
205 |
tcagattccacacagcaacctaagagtcttactaggttcttgtgattaacttgagaaagtattgaaacctcattaagcacttgttgtgtgcttttaaggt |
304 |
Q |
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| T |
41704183 |
tcagattccacacagcaacctaagagtcttactaggttcttgtgattaacttgagaaagtattgaaacctcattaagcacttgttgtgtgcttttaaggt |
41704282 |
T |
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| Q |
305 |
taccaactctagctttcttgacagctacaatagttccatcttgtagttcacctttgtaaacttccccaaagccaccacttcctaggatcctgtcttgtga |
404 |
Q |
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| T |
41704283 |
taccaactctagctttcttgacagctacaatagttccatcttgtagttcacctttgtaaacttccccaaagccaccacttcctaggatcctgtcttgtga |
41704382 |
T |
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| Q |
405 |
aaaacagtttgttgctttcttcaactctttcagttgaaacattttgtaaggtttctcccctccagtgcttgatttcagcacaatttctctttccttggcc |
504 |
Q |
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| T |
41704383 |
aaaacagtttgttgctttcttcaactctttcagttgaaacattttgtaaggtttctcccctccagtgcttgatttcagcacaatttctctttccttggcc |
41704482 |
T |
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| Q |
505 |
tgcttctccctgtagttagagtgtttgaaggactttgtgatgatcacaagaatcacagccaatgnnnnnnnngcaataaccactattga |
593 |
Q |
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| T |
41704483 |
tgcttctccctgtagttagagtgtttgaaggactttgtgatgatcacaagaatcacagccaatgaaaaaaaagcaataaccactattga |
41704571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 520
Target Start/End: Original strand, 1440620 - 1440672
Alignment:
| Q |
468 |
agtgcttgatttcagcacaatttctctttccttggcctgcttctccctgtagt |
520 |
Q |
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| T |
1440620 |
agtgcttggtttcagcagaatttctctttctttggtctgctactcccggtagt |
1440672 |
T |
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