View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15864_high_34 (Length: 323)

Name: NF15864_high_34
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15864_high_34
NF15864_high_34
[»] chr2 (3 HSPs)
chr2 (104-323)||(6852079-6852299)
chr2 (124-323)||(26893647-26893850)
chr2 (124-323)||(26899086-26899289)
[»] chr1 (2 HSPs)
chr1 (233-322)||(51976432-51976522)
chr1 (105-266)||(13362143-13362306)
[»] chr3 (1 HSPs)
chr3 (100-252)||(50304643-50304788)
[»] chr8 (1 HSPs)
chr8 (143-214)||(36391-36462)
[»] chr7 (3 HSPs)
chr7 (201-255)||(29511572-29511626)
chr7 (143-216)||(46251896-46251968)
chr7 (168-213)||(32548176-32548221)
[»] chr4 (3 HSPs)
chr4 (105-218)||(50056641-50056754)
chr4 (280-321)||(23574454-23574496)
chr4 (168-213)||(33370380-33370425)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 104 - 323
Target Start/End: Complemental strand, 6852299 - 6852079
Alignment:
Q  104 aaaaggggattagatccttgatttcaataaagatgtttggaaaatgagagaataaaccatgttattatgggaattgaagaaattgaatgtgtaaaaaatt 203  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  6852299 aaaaggggattagatccttgatttcattaaagatgcttggaaaatgagagaataagccatgttgttatgggaattgaagaaattgaatgtgtaagaaatt 6852200  T
Q  204 tggagtgatgggtatataaagatattgatgaatatgcttcatatgatgatgaatgttgttgttttcaagattgttaatgattttgaacaatt-agtggat 302  Q
    ||||| |||||| ||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  6852199 tggagcgatgggcatgaaaagatattgaggaatatgcttcatatgatgatgaatgttgttgttttcaagattgttaatgattttgaacaattcagttgat 6852100  T
Q  303 gttaatcatccaccatttccc 323  Q
    |||||||||||||||||||||    
T  6852099 gttaatcatccaccatttccc 6852079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 124 - 323
Target Start/End: Complemental strand, 26893850 - 26893647
Alignment:
Q  124 atttcaataaagatgtttggaaaatgagagaataaaccatgttatt---atgggaattgaagaaattgaatgtgtaaaaaatttggagtgatgggtatat 220  Q
    |||| ||||||||||||||||||| |||||||||| ||||||| ||   |||||||||||||||||||||||||||| ||||||||||||||||||||      
T  26893850 attttaataaagatgtttggaaaaagagagaataagccatgttgttgttatgggaattgaagaaattgaatgtgtaagaaatttggagtgatgggtatga 26893751  T
Q  221 aaagatattgatgaatatgcttcatatgatgatgaatgttgttgttttcaagattgttaatgattttgaacaa-ttagtggatgttaatcatccaccatt 319  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26893750 aaagatattgaggaatatgcttcatatgatgatgaatgttgttgttttcaagattgttaatgattttgaacaatttagttgatgttaatcatccaccatt 26893651  T
Q  320 tccc 323  Q
    ||||    
T  26893650 tccc 26893647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 124 - 323
Target Start/End: Complemental strand, 26899289 - 26899086
Alignment:
Q  124 atttcaataaagatgtttggaaaatgagagaataaaccatgttatt---atgggaattgaagaaattgaatgtgtaaaaaatttggagtgatgggtatat 220  Q
    |||| ||||||||||||||||||| |||||||||| ||||||| ||   |||||||||||||||||||||||||||| ||||||||||||||||||||      
T  26899289 attttaataaagatgtttggaaaaagagagaataagccatgttgttgttatgggaattgaagaaattgaatgtgtaagaaatttggagtgatgggtatga 26899190  T
Q  221 aaagatattgatgaatatgcttcatatgatgatgaatgttgttgttttcaagattgttaatgattttgaacaa-ttagtggatgttaatcatccaccatt 319  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26899189 aaagatattgaggaatatgcttcatatgatgatgaatgttgttgttttcaagattgttaatgattttgaacaatttagttgatgttaatcatccaccatt 26899090  T
Q  320 tccc 323  Q
    ||||    
T  26899089 tccc 26899086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 233 - 322
Target Start/End: Complemental strand, 51976522 - 51976432
Alignment:
Q  233 gaatatgcttcatatgatgatgaatgttgttgttttcaagattgttaatgattttgaacaa-ttagtggatgttaatcatccaccatttcc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  51976522 gaatatgcttcatatgatgatgaatgttgttgttttcaagattgttaatgactttgaacaatttagttgatgttaatcatccaccatttcc 51976432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 266
Target Start/End: Original strand, 13362143 - 13362306
Alignment:
Q  105 aaaggggattagatccttgatttcaataaagatgtttggaaaatgagagaataaaccatgttattatgggaattgaagaaattgaatgtgtaaaaaattt 204  Q
    |||||| ||| ||||| ||||||||||||| ||||||| ||||||| ||| ||| || |||| ||||| | |||  ||||| ||||||| | | ||||||    
T  13362143 aaagggaattggatccatgatttcaataaaaatgtttgaaaaatgaaagagtaagccgtgttgttatgagcattttagaaagtgaatgtttgagaaattt 13362242  T
Q  205 ggagtgatgggtatataaa--gatattgatgaatatgcttcatatgatgatgaatgttgttgtt 266  Q
    ||||| |||||||||| ||  |||||||| ||| | ||||||| | ||| |||||||| |||||    
T  13362243 ggagtcatgggtatatgaatggatattgaggaacaagcttcatgttatggtgaatgttattgtt 13362306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 252
Target Start/End: Complemental strand, 50304788 - 50304643
Alignment:
Q  100 cttcaaaaggggattagatccttgatttcaataaagatgtttggaaaatgagagaataaaccatgttattatgggaattgaagaaattgaatgtgtaaaa 199  Q
    |||| |||||| ||| ||| | ||||||||||| | ||||||| ||||||||||||||| | ||||| |||||| |||||||||||||||| ||          
T  50304788 cttcgaaagggtattggatacgtgatttcaatagaaatgtttgaaaaatgagagaataagctatgttgttatggaaattgaagaaattgaacgt------ 50304695  T
Q  200 aatttggagtgatgggtatataaagatattgatgaatatgcttcatatgatga 252  Q
     ||||||||||||||||||  || |||||||| ||||||||||||||||||||    
T  50304694 -atttggagtgatgggtatgaaaggatattgaggaatatgcttcatatgatga 50304643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 36391 - 36462
Alignment:
Q  143 gaaaatgagagaataaaccatgttattatgggaattgaagaaattgaatgtgtaaaaaatttggagtgatgg 214  Q
    |||||||||||| ||| ||||||| |||||||||||||||| |||||| |||||| ||| ||||||||||||    
T  36391 gaaaatgagagagtaagccatgttgttatgggaattgaagatattgaaggtgtaagaaaattggagtgatgg 36462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 29511572 - 29511626
Alignment:
Q  201 atttggagtgatgggtatataaagatattgatgaatatgcttcatatgatgatga 255  Q
    ||||||||||||||||||  || |||||||| |||||||||||||||||||||||    
T  29511572 atttggagtgatgggtatgaaaggatattgaggaatatgcttcatatgatgatga 29511626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 46251896 - 46251968
Alignment:
Q  143 gaaaatgagagaataaaccatgttattatgggaattgaagaaattgaatgtgtaaaaaatttggagtgatgggt 216  Q
    |||||||||||| ||| ||||||| |||||||||||||||| |||||| |||| | ||| ||||||||||||||    
T  46251896 gaaaatgagagagtaa-ccatgttgttatgggaattgaagatattgaaggtgtgagaaaattggagtgatgggt 46251968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 32548221 - 32548176
Alignment:
Q  168 ttatgggaattgaagaaattgaatgtgtaaaaaatttggagtgatg 213  Q
    |||||||| |||||||||||||||||||   |||||||||||||||    
T  32548221 ttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg 32548176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 50056641 - 50056754
Alignment:
Q  105 aaaggggattagatccttgatttcaataaagatgtttggaaaatgagagaataaaccatgttattatgggaattgaagaaattgaatgtgtaaaaaattt 204  Q
    |||||| ||| ||||| ||||||||||||| |||||||  |||||| ||| ||| |  |||| ||||| |||||  ||||||||||||| | | ||||||    
T  50056641 aaagggaattggatccatgatttcaataaaaatgtttgacaaatgaaagagtaagctgtgttgttatgagaattttagaaattgaatgtttgagaaattt 50056740  T
Q  205 ggagtgatgggtat 218  Q
    ||||| || |||||    
T  50056741 ggagtcataggtat 50056754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 23574454 - 23574496
Alignment:
Q  280 atgattttgaacaatt-agtggatgttaatcatccaccatttc 321  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  23574454 atgattttgaacaatttagttgatgttaatcatccaccatttc 23574496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 33370425 - 33370380
Alignment:
Q  168 ttatgggaattgaagaaattgaatgtgtaaaaaatttggagtgatg 213  Q
    |||||||| |||||||||||||||||||   |||||||||||||||    
T  33370425 ttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg 33370380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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