View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_high_39 (Length: 287)
Name: NF15864_high_39
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 46846189 - 46846467
Alignment:
| Q |
1 |
tgtaatctttggtttcctttgttattgtatttatagttttttccatttcttgtgtaaacagagggagtgatggctggagctaaggcagctgttgttgcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46846189 |
tgtaatctttggtttcctttgttattgtatttatagttttttccatttcttgtgcaaacagagggtgtgatggctggagctaaggcagctgttgttgcta |
46846288 |
T |
|
| Q |
101 |
ctattgctactgccattccaactgtaactactccttcaacctattcaattttccttgcttcatgcttctattaattttgacacagttttgattattagtt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46846289 |
ctattgctactgccattccaactgtaactactccttcaacctattcaattttccttgcttcatgcttctattaattttgacacagttttgattattagtt |
46846388 |
T |
|
| Q |
201 |
tacatttaaaataaccactcttaaatatcctaagaaagagactttttggtatataattaactggaattatatattcttg |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46846389 |
tacatttaaaataaccactcttaaatatcctaagaaagagactttttggtatataattaactggaattatatatgcttg |
46846467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 50392456 - 50392369
Alignment:
| Q |
47 |
ttcttgtgtaaacagagggagtgatggctggagctaaggcagctgttgttgctactattgctactgccattccaactgtaactactccttc |
137 |
Q |
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||||||||||||||||||| ||||| ||||||||||||| | ||||||||||||||||| |||||||||||| || |||| |||||||| |
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| T |
50392456 |
ttcttgtgtaaacagagggtgtgattgctggagctaaggta---gttgttgctactattgccactgccattccagctttaaccactccttc |
50392369 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 48304128 - 48304218
Alignment:
| Q |
47 |
ttcttgtgtaaacagagggagtgatggctggagctaaggcagctgttgttgctactattgctactgccattccaactgtaactactccttc |
137 |
Q |
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| T |
48304128 |
ttcttgtgtaaacagagggtgtgatggctggagctaaggcagctgttgttgctactattgccactgccattccaactgtaaccactccttc |
48304218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 36359607 - 36359517
Alignment:
| Q |
47 |
ttcttgtgtaaacagagggagtgatggctggagctaaggcagctgttgttgctactattgctactgccattccaactgtaactactccttc |
137 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |||||||| |
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| T |
36359607 |
ttcttgtgtaaacagagggtgtgatggctggagctaaggcagttgttgttgctactattgccactgtcattccaactgtaaccactccttc |
36359517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 168
Target Start/End: Original strand, 34440834 - 34440955
Alignment:
| Q |
47 |
ttcttgtgtaaacagagggagtgatggctggagctaaggcagctgttgttgctactattgctactgccattccaactgtaactactccttcaacctattc |
146 |
Q |
| |
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||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| | ||||| |
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| T |
34440834 |
ttcttatgtaaagagagggtatgatggctggagctaaggcagctgttgttgctactattgccactgccattccaactctaaccactccttccatctattt |
34440933 |
T |
|
| Q |
147 |
aattttccttgcttcatgcttc |
168 |
Q |
| |
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||||||| || |||||| |||| |
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| T |
34440934 |
aattttcttttcttcatacttc |
34440955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 38950402 - 38950490
Alignment:
| Q |
49 |
cttgtgtaaacagagggagtgatggctggagctaaggcagctgttgttgctactattgctactgccattccaactgtaactactccttc |
137 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||| |
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| T |
38950402 |
cttgtgtaaacagagggtgtgatggctggagctaaggcagctgttgttgctactgttgccactgtcattccaactgtaaccactccttc |
38950490 |
T |
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