View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_high_4 (Length: 582)
Name: NF15864_high_4
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 71 - 515
Target Start/End: Complemental strand, 11919848 - 11919403
Alignment:
| Q |
71 |
tgtttgaaacgatagtattaggtgtatatggcctatctttatccgaatattccgcctagaggctctggttcaattgttctggcgtgtgttgaggataagg |
170 |
Q |
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| T |
11919848 |
tgtttgaaacgatagtattaggtgtatatggcctatctttatccgaatattccgcctagaggctctggttcaattgttctggcgtgtgttgaggataagg |
11919749 |
T |
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| Q |
171 |
acgaaatggtgttcttcgacttttaggcggcaccctccgtatgggcactttgtccttatcttgacttatggtggtccatatcccctagacacgagtcctg |
270 |
Q |
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| T |
11919748 |
acgaaatggtgttcttcgacttttaggcggcaccctccgtatgggcactttgtccttatcttgacttatggtggtccatatcccctagacacgagtcctg |
11919649 |
T |
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| Q |
271 |
aataagggttaagtgttgtggaaattagggtagtccacaac-ccccaagcacgagttctgaataagggcaaagtggcttggggaaattttggcggtccaa |
369 |
Q |
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| T |
11919648 |
aataagggttaactgctgcggaaattatggtagtccacaaccccccaagcatgagtcctgaataagggcaaagtggtttggggaaattttggcggtccaa |
11919549 |
T |
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| Q |
370 |
atgttaaaggaaagtatataaagataatatttgatggattaatttttatatatttttcaacaaccggatccaaaaacttgaatagtggtgttatgtcttt |
469 |
Q |
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| T |
11919548 |
atgttaaaggaaagtatataaagataatatttgatggattaatttttatatatttttcaacaaccggatccaaaaacttgaatagtggtgttatgtcttt |
11919449 |
T |
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| Q |
470 |
ggtttactacaaatcatactaatataaaaaatgaactgatacaaac |
515 |
Q |
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| T |
11919448 |
ggtttgctacaaatcacattaatataaaaaatgaactgatacaaac |
11919403 |
T |
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