View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_high_49 (Length: 238)
Name: NF15864_high_49
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44109332 - 44109112
Alignment:
| Q |
1 |
ttcttgagatgctgacagttattaccaacctccaactattacacttcaagactccaatcttgtatcgattctaagtgtagatagcacattctcctctttc |
100 |
Q |
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| T |
44109332 |
ttcttgagatgcagacagttattaccaacctccaactattacacttcacgactccaatcttgtatcgattctaagtgtagatagcacattctcctctttc |
44109233 |
T |
|
| Q |
101 |
tgtcggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaagagatttcatatgcacttgaaattgtatttgtgtactttttg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44109232 |
tgttggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaagagatttcatatgcacttgaaattgtatttgtgtactttttg |
44109133 |
T |
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| Q |
201 |
tatattcagtcatgacattta |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
44109132 |
tatattcagtcatgacattta |
44109112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 44146781 - 44146633
Alignment:
| Q |
73 |
aagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaagagatttcatatgc |
172 |
Q |
| |
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||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| |
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| T |
44146781 |
aagtgtagatagcacgttcttctctttctgtcgggaaatgctttggcaaaacatttagtacctgtggtgtagtggcgggtgagtaagagatttcatatgc |
44146682 |
T |
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| Q |
173 |
acttgaaattgtatttgtgtactttttgtatattcagtcatgacattta |
221 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
44146681 |
acttgaaattgtatttctgtgctttttgtatattcagtcatgacattta |
44146633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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