View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_high_5 (Length: 579)
Name: NF15864_high_5
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 45708877 - 45709461
Alignment:
| Q |
1 |
ccacccattgatagtcatactgcaaaaccaattaaataaattcagtacattagtcaccaaacttgtaaattaaacttnnnnnnnnn-----caaagagta |
95 |
Q |
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| T |
45708877 |
ccacccattgatagtcatactgcaaaaccaattaaataaattcagtacattagtcaccaaacttgtaaattaaacttaaaaaaaaaaaaaacaaagagta |
45708976 |
T |
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| Q |
96 |
ctccatccttaaatataagagcacattgattaaattttattgttgatgtaattaaaataactaggagtactctttcnnnnnnnn--tattaataactagg |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45708977 |
ctccatccttaaatataagagcacattgattaaattttattgttgatgtaattaaaataactaggagtactctttcaaaaaaaagatattaataactagg |
45709076 |
T |
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| Q |
194 |
agtagtattttaataaagaaataactgattaaatttnnnnnnnnnnttataggaagaggaggcacagaatacttaccatacagacaaggcatcaacagca |
293 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45709077 |
agtagtattttaataaagaaataactgattaaatttaaaagaaattttataggaagaggaggcacagaatacttaccatacagacaaggcatcaacagca |
45709176 |
T |
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| Q |
294 |
acagtcgcattctccaactggccagtcataagtagcagtatcctgtaataccagttctctaaactgcacaaatcactaacataagtaggagtatattact |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45709177 |
acagtcgcattctccaactggccagtcataagtagcagtatcctgtaataccagttctctaaactgcacaaatcactaacataagtaggagtatattact |
45709276 |
T |
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| Q |
394 |
tgcacaccaaggttttcctttcaagaaatacaaatttaattttgtgtcacatcacatcacatgcacgtacgtgatttaggctctagacattaacttaata |
493 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45709277 |
tgcacaccaaggttttcctttcaagaaatataaatttaattttgtg-----tcacatcacatgcacgtacgtgatttaggctctagacattaacttaata |
45709371 |
T |
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| Q |
494 |
tgatcatgtattaagag----atagagattgtcataacgtaccatagcataactccagaagcaaaagagagtttgaagaaatcccaaaga |
579 |
Q |
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| T |
45709372 |
tgatcatgtattaagagatatatagagattgtcataacgtaccatagcataactccagaagcaaaagagagtttgaagaaatcccaaaga |
45709461 |
T |
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