View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_high_53 (Length: 232)
Name: NF15864_high_53
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 13768408 - 13768206
Alignment:
| Q |
17 |
tcaagatcgttcttcaaacttttgacaaacgacttccacatttgtaattcaaattccatttcacttatttcacatgttctatcatccaattcaatgtttg |
116 |
Q |
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| T |
13768408 |
tcaagatcgttcttcaaacttttgacaaacgacttccacatttgtaattcaaattccatttcacttatttcacatgttctatcatccaattcaatatttg |
13768309 |
T |
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| Q |
117 |
gcttgtctagagcattataaacttcgaaaagttgttccttcaaatccattttggttttacactttgttgattcttcaagcatatccttgtggatattatg |
216 |
Q |
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| T |
13768308 |
gcttgtctagagcattataaacttcgaaaagttgttccttcaaatccattttggttttacactttgttgattcttcaagcatatccttgtggatattatg |
13768209 |
T |
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| Q |
217 |
ttc |
219 |
Q |
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||| |
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| T |
13768208 |
ttc |
13768206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 28765432 - 28765370
Alignment:
| Q |
47 |
gacttccacatttgtaattcaaattccatttcacttatttcacatgttctatcatccaattca |
109 |
Q |
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| T |
28765432 |
gacttccatatttgcaattcaaattccatttcacttctttcgcaaattctctcatccagttca |
28765370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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