View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_high_8 (Length: 559)
Name: NF15864_high_8
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 119 - 552
Target Start/End: Original strand, 39753395 - 39753839
Alignment:
| Q |
119 |
cagcatctatagtctctttggtccccaattatctgaaattgcttttagaaagcgcaagacaagttccatcaaagaaagcacaagaaaatatacctattaa |
218 |
Q |
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| T |
39753395 |
cagcatctatagtctttttggtccccaattatctgaaattgcttttagaaagcacaagacaagttccatcaaagaaagcacaagaaaatatacctattaa |
39753494 |
T |
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| Q |
219 |
atttaaacctaagtagaatnnnnnnn-taaaactccattagcattaaataattgaactgaatccattacggtgtcctctttagacctcttcttattggca |
317 |
Q |
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| T |
39753495 |
atttaaacctaagtagaataaaaaaaataaaactccattagcattaaataattgaactgaatccattacggtgtcctctttagacctct-------ggca |
39753587 |
T |
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| Q |
318 |
acataaataaattaagaaggttcttatttgattactatatttactaactaacaaaat-----------------gtcatatgtattgtggcaggttcatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39753588 |
acataaataaattaagaaggttcttatttgattactatatttactaactaacaaaatactttatgcattaacatgtcatatgtattgtggcaggttcatt |
39753687 |
T |
|
| Q |
401 |
ctctcgaaccgctgttaattatgctgctggatgtgaaagtttaatatcaaacattgtgatggccattacagtgatgatatcactgcaatttttgacaaat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39753688 |
ctctcgaaccgctgttaattatgctgctggatgtgaaagtttaatatcaaacattgtgatggccattacagtgatgatatcactgcaatttttgacaaat |
39753787 |
T |
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| Q |
501 |
ctattgtattatacaccaattgctattattgcttcagtgattctctctgctc |
552 |
Q |
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| T |
39753788 |
ctattgtattatacaccaattgctattattgcttcagtgattctctctgctc |
39753839 |
T |
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