View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_11 (Length: 551)
Name: NF15864_low_11
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Complemental strand, 29113161 - 29112651
Alignment:
| Q |
16 |
aatatgactaaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcagaga |
115 |
Q |
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| T |
29113161 |
aatatgactaaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcggaga |
29113062 |
T |
|
| Q |
116 |
agtttgacaatggtatgacaaatgatttgattcttgaagtgcagtattttgtccttgatgcaatccttgagttattctgccaacgagaggaattcattgt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29113061 |
agtttgacaatggtatgacaaatgatttgattcttgaagtgcaatattttgtccttgatgcaatccttgagttattctgccaatgagaggaattcattga |
29112962 |
T |
|
| Q |
216 |
tgaaatataagttaggtacaaacacagcttagcaggagaagtttagcaaacatgtaaaaaattaggaaaataaataaatatgcaactcctatgtataaat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29112961 |
tgaaatataagttaggtacaaacacagcttagcaggagaagtttagcaaacatgtcaaaaattaggaaaataaataaatatgcaactcctatgtataaat |
29112862 |
T |
|
| Q |
316 |
ataatccacaacagaaagacatttacatattattgttgttcttatttgttatactaataaatgatctgatttcaatttttcctatcgtttacaacaatgt |
415 |
Q |
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| T |
29112861 |
ataatccacaacagaaagacatttacatattat---tgttcttatttgttatactaataaatgatctgatttcaatttttcctattgtttacaacaatgt |
29112765 |
T |
|
| Q |
416 |
tataggtacgcatatctaccaccatttagcagtgatagatctttgtcggagaatttattggccacgtaatgtagcttctcctctccaaaccaaattttct |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29112764 |
tataggtacgcatatctaccaccatttagcagtgatagatctttgtcggagaatttattggccacgtaatgtagattctcctctccaaaccaaattttct |
29112665 |
T |
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| Q |
516 |
catagccaagattc |
529 |
Q |
| |
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|||||||||||||| |
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| T |
29112664 |
catagccaagattc |
29112651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 33312734 - 33313046
Alignment:
| Q |
19 |
atgactaaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcagagaagt |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33312734 |
atgactaaatttgaaatggcaaatcattagttttagctttgccacattgaactgattatgcatggaataccaggaaaagaatctgtatcagcagagaagt |
33312833 |
T |
|
| Q |
119 |
ttgacaatggtatgacaaatgatttgattcttgaagtgcagtattttgtccttgatgcaatccttgagttattctgccaacgagaggaattcattgttga |
218 |
Q |
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| T |
33312834 |
ttgacaatggtatgaaaaatgatttgattcttgaagtgcaatattttgtccttgatgcaatccttgagttattctgcgaatgagaggaattcattgatga |
33312933 |
T |
|
| Q |
219 |
aatataagttaggtacaaacacagcttagcaggagaagtttagcaaacatgtaaaaaattaggaaaataaataaatatgcaactcctatgtataaatata |
318 |
Q |
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| T |
33312934 |
attataagttaggtacaaacacaggttagcaggaaaagtttagcaagcatgtaaaaaattaggaaaaaaaataaatatgtaactcctatgtataaatgta |
33313033 |
T |
|
| Q |
319 |
atccacaacagaa |
331 |
Q |
| |
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|||| |||||||| |
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| T |
33313034 |
atccccaacagaa |
33313046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 416 - 516
Target Start/End: Original strand, 33313052 - 33313152
Alignment:
| Q |
416 |
tataggtacgcatatctaccaccatttagcagtgatagatctttgtcggagaatttattggccacgtaatgtagcttctcctctccaaaccaaattttct |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||| |
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| T |
33313052 |
tataggtacgcatatctaccaccatttagcagtgatagatctttgtcgtggaatttattaaccacataatgtagattctcctctccaaaccaaattttct |
33313151 |
T |
|
| Q |
516 |
c |
516 |
Q |
| |
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| |
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| T |
33313152 |
c |
33313152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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