View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_14 (Length: 481)
Name: NF15864_low_14
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 4 - 461
Target Start/End: Original strand, 4760986 - 4761441
Alignment:
| Q |
4 |
ttaccctttgtaactgaacccccaggttctggaagctccacaaacacaacctctccaagatggtcctgcaaccaacaagtgcaattaattaaacagtttc |
103 |
Q |
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| T |
4760986 |
ttaccctttgtaactgaacccccaggttctggaagctccacaaacacaacctctccaagatggtcctgcaaccaacaagtgcaattaattaaacagtttc |
4761085 |
T |
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| Q |
104 |
agccttcacctaagttgtaaattgtaatgattatgttagtatattagttttatgttagtagtttctctttcgtcagggtttgaatctcgatcattttcct |
203 |
Q |
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| T |
4761086 |
agccttcacctaagttgtaaattgtaatgattatgttagtatattagctttatgttagtagtttctctttcgtcagggtttgaatctcgatcattttcct |
4761185 |
T |
|
| Q |
204 |
actttaacccttagctcaattcagtcaagttatgtagttcagttctaagttgcagtagttaaagtctaattcaatttacatgcataaacatactagagac |
303 |
Q |
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| T |
4761186 |
actttaacccttagctcaattcagtcaagttatgtagttcagttataagttgcagtagttaaagtctaattcaatttacatgcatacacatactagagac |
4761285 |
T |
|
| Q |
304 |
ccatacacgaacatattatagagaattatttttatagctgactatctgacctaacaaccgactaatctgagtggtattataataccactgtccacttgt- |
402 |
Q |
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|||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4761286 |
ccatacacgaacatattatagagaattatttttataacttagtatctgacctaacaaccgactaatctgagtgg---tataataccactgtccacttgtg |
4761382 |
T |
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| Q |
403 |
ggggcctcatttaaaatcagagcgttctgcatggacatattatggagaatgttaaggag |
461 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
4761383 |
ggggcctcatttaaaaccagagcgctctgcatggacatattacggagaatgttaaggag |
4761441 |
T |
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