View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_16 (Length: 468)
Name: NF15864_low_16
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 14 - 451
Target Start/End: Complemental strand, 3306381 - 3305944
Alignment:
| Q |
14 |
gaaaggagtatacgcgcaaaagcagacgatttgatcaatgggagtgcaaatataagaaaaagaaaggattagatgaattcgatcgaaatagaggcgaaga |
113 |
Q |
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| T |
3306381 |
gaaaggagtatacgcgcaaaagcagacgatttgatcaatgggagtgcaaatataagaaaaagaaaggattagatgaattcgatcaaaatagaggcgaaga |
3306282 |
T |
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| Q |
114 |
tgatattaatgatcctcctgaggttgtaatggagaagagagttttggttgaactagagaagaggttggatgaggaaaaagatgcatttgaaaaacagtgc |
213 |
Q |
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| T |
3306281 |
tgatattaatgatcctcctgaggttgcaatggagaagagagttttggttgaactagagaagaggttggatgaggaaaaagatgcatttgaaaaacagtgc |
3306182 |
T |
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| Q |
214 |
ctacatgtgaggcaaaaatcattaagttgtctaaaaaataacttgctagagctcttaaaggctatggcagatttttcatttgaatgttctaaaatgtaca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3306181 |
ctacatgtgaggcaaaaatcattaagttgtctaaaaaataacttgctagagctcttaaaggctatgacagatttttcatttgaatgttctaaaatgtaca |
3306082 |
T |
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| Q |
314 |
gtgaattaaggtttgtagcacatagattaggatcagcagaaagctgattatgagaattgggctgtgtattaaatttttggggagagagggaaggaatgtt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3306081 |
gtgaattaaggtttgtagcacatagattaggatcagcagaaagctgattatgagaattgggctgtgtattaaatttttggggagagagggaaggaatgtt |
3305982 |
T |
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| Q |
414 |
gtaagttaggcatatagtacatttcatgtgttattcat |
451 |
Q |
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| T |
3305981 |
gtaagttaggcatatagtacatttcatgtgttattcat |
3305944 |
T |
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