View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_17 (Length: 463)
Name: NF15864_low_17
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 41589261 - 41589715
Alignment:
| Q |
1 |
atacaactacaattacaacccttttctactcccaaatactcctccattttctcctaataactttgtttctcaatctaattcaaccattttcccttctttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41589261 |
atacaactacaattacaacccttttctactcccaaatactcctccattttctcctaataactttgtttctcaatctaattcaaccattttcccttctttc |
41589360 |
T |
|
| Q |
101 |
aataatgctctttctcaggaggtacttcagacagaaaactttgaagaagagcattttctcaatgtgtcacaaaatggatcagaacaagtgtatgtagatg |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41589361 |
aataatgctctttctcatgaggtacttcagacagaaaactttgaagaagagcattttctcaatgtgtcacaaaatggatcagaacaagtgtatgtagatg |
41589460 |
T |
|
| Q |
201 |
atagcggtgagttatcagaattatttgataaagtactagttcttggtactaaattcacaaaagggccacttcaaaacacaagcttccagcagaatgaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41589461 |
atagcggtgagttatcagaattatttgataaagtactagttcttggtactaaattcacaaaagggccacttcaaaacacaagcttccagcagaatgaaga |
41589560 |
T |
|
| Q |
301 |
attatcaaacagattctatggttctaggagaaagagaagttatgaggaagttgtggatttgaggacactattgatgctatgtgcacaatccatttcttgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41589561 |
attatcaaacagattctatggttctaggagacaaagaagttatgaggaagttgtggatttgaggacactattgatgctatgtgcacaatccatttcttgt |
41589660 |
T |
|
| Q |
401 |
aatgttatttcaaatgctaaccaattattaaaccagattaagaaacattcttctc |
455 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41589661 |
aatgatatttcaaatgctaaccaattattaaaccagattaagaaacattcttctc |
41589715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 41582732 - 41583186
Alignment:
| Q |
1 |
atacaactacaattacaacccttttctactcccaaatactcctccattttctcctaataactttgtttctcaatctaattcaaccattttcccttctttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
41582732 |
atacaactacaattacaacccttttctactcccaaatactcctccattttctcctaataactttgtttctcaatctaattcaacccttttcccttccttc |
41582831 |
T |
|
| Q |
101 |
aataatgctctttctcaggaggtacttcagacagaaaactttgaagaagagcattttctcaatgtgtcacaaaatggatcagaacaagtgtatgtagatg |
200 |
Q |
| |
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||||||||||||||||| || | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || |
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| T |
41582832 |
aataatgctctttctcatgacgcaattcagacagagaactttgaagaagagcattttctcaatgtgtcacaaaatggatcagaacaattgcatgtaggtg |
41582931 |
T |
|
| Q |
201 |
atagcggtgagttatcagaattatttgataaagtactagttcttggtactaaattcacaaaagggccacttcaaaacacaagcttccagcagaatgaaga |
300 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| |
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|
| T |
41582932 |
ataccagtgagttatcagaattatttgataaagtactagttcttggtactaaattcacaaaagggctacttcgaaacacaagctttcagcagaatgaaga |
41583031 |
T |
|
| Q |
301 |
attatcaaacagattctatggttctaggagaaagagaagttatgaggaagttgtggatttgaggacactattgatgctatgtgcacaatccatttcttgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
41583032 |
attatcaaacagattctatggttctaggagacaaagaagttatgaggaagttgtggatttgaggacactattgatgctgtgagcacaatccatttcttgt |
41583131 |
T |
|
| Q |
401 |
aatgttatttcaaatgctaaccaattattaaaccagattaagaaacattcttctc |
455 |
Q |
| |
|
|||| |||||||||||| || |||||||||||||||||||||||||||||||||| |
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|
| T |
41583132 |
aatgatatttcaaatgcaaatcaattattaaaccagattaagaaacattcttctc |
41583186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 41556616 - 41557055
Alignment:
| Q |
1 |
atacaactacaattacaacccttttctactcccaaatactcctccattttctcctaataactttgtttctcaatctaattcaaccattttcccttctttc |
100 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||| ||||| |||| ||||||||| |
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|
| T |
41556616 |
atacaactataataacaacccttttctactcccaactactcttccatttcctcctaataactttgtttctcaatccaatccaaccctttttccttctttc |
41556715 |
T |
|
| Q |
101 |
aataatgctctttctcaggaggtacttcagacagaaaactttgaagaagagcattttctcaatgtgtcacaaaatggatcagaacaagtgtatgtagatg |
200 |
Q |
| |
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|| |||||||||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||| |
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| T |
41556716 |
aacaatgctctttctcatgaggtatttaagacagaaaactttgaagaagagcattttcttaatgtgtca------------gaacaagtgaaagtagatg |
41556803 |
T |
|
| Q |
201 |
atagcggtgagttatcagaattatttgataaagtactagttcttggtactaaattcacaaaagggccacttcaaaacacaagcttccagcagaatgaaga |
300 |
Q |
| |
|
||| | | |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
41556804 |
ataacagcgagttatcagaattatttgataaattact---tcttggtactaaagtcacaaaagggccgcatcaaaacacaagcttccagcagaatgaaga |
41556900 |
T |
|
| Q |
301 |
attatcaaacagattctatggttctaggagaaagagaagttatgaggaagttgtggatttgaggacactattgatgctatgtgcacaatccatttcttgt |
400 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41556901 |
attatcaaacagattcggtggttttaggagaaagagaagttatgaggaagttgtggatttgaggacactattgatgctatgtgcacaatccatttcttgt |
41557000 |
T |
|
| Q |
401 |
aatgttatttcaaatgctaaccaattattaaaccagattaagaaacattcttctc |
455 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41557001 |
aatgatatttcaaatgcaaaccaattattaaaccagattaagaaacattcttctc |
41557055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 112 - 455
Target Start/End: Original strand, 41570424 - 41570767
Alignment:
| Q |
112 |
ttctcaggaggtacttcagacagaaaactttgaagaagagcattttctcaatgtgtcacaaaatggatcagaacaagtgtatgtagatgatagcggtgag |
211 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | | ||| |
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|
| T |
41570424 |
ttctcatgaggtgattaagacagaaaactttgaagaagagcattttctcaatgtgtcacaaaatgagtcagaacaagtatatgtagatgataacagcgag |
41570523 |
T |
|
| Q |
212 |
ttatcagaattatttgataaagtactagttcttggtactaaattcacaaaagggccacttcaaaacacaagcttccagcagaatgaagaattatcaaaca |
311 |
Q |
| |
|
||| ||||||||||||||||| ||||||| |||||||||||| | | ||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |
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|
| T |
41570524 |
ttaccagaattatttgataaattactagtccttggtactaaagtaaaaaaagggccacttcaaaacacaagctttcagcagaattatgaattatcaaaca |
41570623 |
T |
|
| Q |
312 |
gattctatggttctaggagaaagagaagttatgaggaagttgtggatttgaggacactattgatgctatgtgcacaatccatttcttgtaatgttatttc |
411 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
41570624 |
gattctatggttataggagacagagaagttatgaggaagttgtggatttgaggacactattgatgctatgtgcacaatccatttcttgtaatgatatttc |
41570723 |
T |
|
| Q |
412 |
aaatgctaaccaattattaaaccagattaagaaacattcttctc |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41570724 |
aaatgctaaccaattattaaaccagattaagaaacattcttctc |
41570767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41570334 - 41570404
Alignment:
| Q |
1 |
atacaactacaattacaacccttttctactcccaaatactcctccattttctcctaataactttgtttctcaat |
74 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||||| |||| || |||| |||||||||||||||| |
|
|
| T |
41570334 |
atacaactacaattacaacacctttccactcccaaatactcttccaattcctcc---aaactttgtttctcaat |
41570404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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