View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15864_low_21 (Length: 418)

Name: NF15864_low_21
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15864_low_21
NF15864_low_21
[»] chr6 (9 HSPs)
chr6 (11-406)||(2297205-2297600)
chr6 (100-351)||(2261232-2261483)
chr6 (58-302)||(2307408-2307652)
chr6 (58-302)||(2340089-2340333)
chr6 (123-351)||(2351493-2351721)
chr6 (122-256)||(14711313-14711447)
chr6 (117-259)||(14753379-14753521)
chr6 (139-280)||(2363195-2363336)
chr6 (139-249)||(2368972-2369082)
[»] scaffold0408 (1 HSPs)
scaffold0408 (117-248)||(553-684)
[»] chr3 (1 HSPs)
chr3 (139-280)||(4305893-4306034)
[»] chr4 (1 HSPs)
chr4 (28-298)||(5804121-5804391)


Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Complemental strand, 2297600 - 2297205
Alignment:
Q  11 gctagtaaaatcaaggacttcagtcaaatcaattgattcaggagatagattcaagatgtcaaaagaatgcaagaaattagctagaatataatgaagcata 110  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2297600 gctagtaaattcaaggacttcagtcaaatcaattgattctggagatagattcaagatatcaaaagaatgcaagaaattagctagaatataatgaagcata 2297501  T
Q  111 tgcaaaccaagggatattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaa 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2297500 tgcaaaccaagggacattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgttagtggtaa 2297401  T
Q  211 gaaacctttcaggtttgaattctaatggatctggccaaaccctagggtctctatgaatcttccatagatttggcatcaatcgagttccctttttgatatg 310  Q
    |||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2297400 gaaacctttcaggtttaaattctaatggatctgaccaaaccctagagtctctatgaatcttccatagatttggcatcaatcgagttccctttttgatatg 2297301  T
Q  311 gtatccgcctattgtgcaatcttctgtgaattcgcgaggtgacgaaaatggagctggtggatagaatcttagtgtctctttaattatagcatcaag 406  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2297300 gtatccacctattgtgcaatcttctgtgaattcgcgaggtgacgaaaatggagctggtggatagaatcttagtgtctctttaattatagcatcaag 2297205  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 100 - 351
Target Start/End: Original strand, 2261232 - 2261483
Alignment:
Q  100 aatgaagcatatgcaaaccaagggatattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatcttt 199  Q
    |||||| |||||| | |||||  |||||||| | |||  ||||||| |||||||||||||| ||||||||||||| |||||||     |||||||| |||    
T  2261232 aatgaatcatatgaagaccaaaagatattcctggacatatccttctaccacttccaaatggtaacaactcaaaatgttgacccttggcatcaacattttt 2261331  T
Q  200 gtgagtggtaagaaacctttcaggtttgaattctaatggatctggccaaaccctagggtctctatgaatcttccatagatttggcatcaatcgagttccc 299  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||||||||  || || ||  | ||||| ||||| |||||||  || | || ||||||     
T  2261332 gtgagtggtaagaaatctttctggtttgaactctaatggatctggccaaatacttggatcggtttgaattttccaaagatttgtgataagtctagttcct 2261431  T
Q  300 tttttgatatggtatccgcctattgtgcaatcttctgtgaattcgcgaggtg 351  Q
    ||||||||| | || || ||||  || ||||||||||||||||| |||||||    
T  2261432 tttttgatacgatagccacctaacgtacaatcttctgtgaattcacgaggtg 2261483  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 58 - 302
Target Start/End: Complemental strand, 2307652 - 2307408
Alignment:
Q  58 gattcaagatgtcaaaagaatgcaagaaattagctagaatataatgaagcatatgcaaaccaagggatattccagcacacctccttcttccacttccaaa 157  Q
    |||| ||||| ||||| |||||||| ||| ||||||||||  |||| ||||| || |  ||||| ||||||||||  ||  ||||||| |||||||||||    
T  2307652 gatttaagatatcaaaggaatgcaaaaaactagctagaatgaaatgcagcatttgaagtccaagtgatattccagggcatatccttctaccacttccaaa 2307553  T
Q  158 tggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttcaggtttgaattctaatggatctggccaaaccctaggg 257  Q
    |||||| | | |||||||   ||||| || |||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||   ||||     
T  2307552 tggcaatagcacaaaattactacccctaacatcaacatctttatgagtggtaagaaatctttctggtttgaactctaatggatctggccaaatattagga 2307453  T
Q  258 tctctatgaatcttccatagatttggcatcaatcgagttcccttt 302  Q
    ||  | | |||| |||| |||||||  || |||||||||||||||    
T  2307452 tccgtgttaatcctccaaagatttgtgattaatcgagttcccttt 2307408  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 58 - 302
Target Start/End: Complemental strand, 2340333 - 2340089
Alignment:
Q  58 gattcaagatgtcaaaagaatgcaagaaattagctagaatataatgaagcatatgcaaaccaagggatattccagcacacctccttcttccacttccaaa 157  Q
    |||| ||||| ||||| |||||||| ||| |||||||  |  |||| ||||| || |  ||||  |||||||||| |||  ||||||| |||||||||||    
T  2340333 gatttaagatatcaaaggaatgcaaaaaactagctagggtgaaatgcagcatttgaagtccaaacgatattccaggacatttccttctaccacttccaaa 2340234  T
Q  158 tggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttcaggtttgaattctaatggatctggccaaaccctaggg 257  Q
    ||| || |  |||||||  | ||| | || ||||||| |||| |||||||||| ||||||||| |||||||| |||||||||||||||||||| |||||     
T  2340233 tggtaatagttcaaaatgattacctctaacatcaacagctttatgagtggtaaaaaacctttctggtttgaactctaatggatctggccaaacactagga 2340134  T
Q  258 tctctatgaatcttccatagatttggcatcaatcgagttcccttt 302  Q
    ||| | ||||||||||| |||||||  || |||||||||||||||    
T  2340133 tctgtttgaatcttccaaagatttgtgattaatcgagttcccttt 2340089  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 351
Target Start/End: Complemental strand, 2351721 - 2351493
Alignment:
Q  123 gatattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttcag 222  Q
    |||||| ||| |||| ||||||| |||||||||||||| |  |  |||||||  | ||| | || ||||||| |||| |||||||||||||||||||| |    
T  2351721 gatattgcaggacacttccttctaccacttccaaatggtagtagttcaaaatgattacctctaacatcaacaactttatgagtggtaagaaacctttctg 2351622  T
Q  223 gtttgaattctaatggatctggccaaaccctagggtctctatgaatcttccatagatttggcatcaatcgagttccctttttgatatggtatccgcctat 322  Q
    ||||||| ||||||||||||| |||||| ||||| ||  | ||||||||||| |||||| |||| || |||||||| ||| | | |||||| || || ||    
T  2351621 gtttgaactctaatggatctgaccaaacactaggatcagtttgaatcttccaaagatttagcattaaccgagttccttttctaacatggtaaccaccaat 2351522  T
Q  323 tgtgcaatcttctgtgaattcgcgaggtg 351  Q
     |||||||  |||| |||||| |||||||    
T  2351521 agtgcaattctctgagaattcacgaggtg 2351493  T

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Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 122 - 256
Target Start/End: Original strand, 14711313 - 14711447
Alignment:
Q  122 ggatattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttca 221  Q
    ||||||||||| |||| |||||||||||||||||||||| || | ||||||||  | ||| | || |||||||||||| ||||| |||||||| || |||    
T  14711313 ggatattccaggacacatccttcttccacttccaaatggtaaaagctcaaaatgattacctctaacatcaacatctttatgagttgtaagaaatctctca 14711412  T
Q  222 ggtttgaattctaatggatctggccaaaccctagg 256  Q
    |||||||| || |||||||| |||||||| |||||    
T  14711413 ggtttgaactccaatggatccggccaaacactagg 14711447  T

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Target: chr6; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 117 - 259
Target Start/End: Original strand, 14753379 - 14753521
Alignment:
Q  117 ccaagggatattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacc 216  Q
    |||| ||||||||||| |||  |||||||||||||||||||||| || ||||||||||  ||||||  || |||||||||||| ||||| |||||||| |    
T  14753379 ccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaagaaatc 14753478  T
Q  217 tttcaggtttgaattctaatggatctggccaaaccctagggtc 259  Q
    |  |||| ||||| || |||||||| |||||||| ||||||||    
T  14753479 tcccaggcttgaactccaatggatccggccaaacgctagggtc 14753521  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 280
Target Start/End: Complemental strand, 2363336 - 2363195
Alignment:
Q  139 tccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttcaggtttgaattctaatgg 238  Q
    ||||||| |||| ||||||||| || | ||||||||  | ||| | || ||||| |||||| || || ||||||||||| || ||||||||| |||||||    
T  2363336 tccttctaccacctccaaatggtaatagctcaaaatgattacctctaaaatcaatatctttatgcgttgtaagaaacctctccggtttgaatactaatgg 2363237  T
Q  239 atctggccaaaccctagggtctctatgaatcttccatagatt 280  Q
    ||||| ||||||  |||| ||  | ||||||||||| |||||    
T  2363236 atctgaccaaacattaggatcagtgtgaatcttccaaagatt 2363195  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 2369082 - 2368972
Alignment:
Q  139 tccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttcaggtttgaattctaatgg 238  Q
    ||||||| |||| ||||||||| || | ||||||||  ||||| | || |||||| ||||| || || ||||||||||  || ||||||||||| |||||    
T  2369082 tccttctaccacctccaaatggtaatagctcaaaatgatgacctctaacatcaacgtctttatgggtagtaagaaaccgctctggtttgaattccaatgg 2368983  T
Q  239 atctggccaaa 249  Q
    || || |||||    
T  2368982 atttgaccaaa 2368972  T

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Target: scaffold0408 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 684 - 553
Alignment:
Q  117 ccaagggatattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacc 216  Q
    |||| ||||||||||| |||  |||||||||||||||||||||| || ||||||||||  ||||||  || |||||||||||| ||||| |||||||| |    
T  684 ccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaagaaatc 585  T
Q  217 tttcaggtttgaattctaatggatctggccaa 248  Q
    |  |||| ||||| || |||||||| ||||||    
T  584 tcccaggcttgaactccaatggatccggccaa 553  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 139 - 280
Target Start/End: Complemental strand, 4306034 - 4305893
Alignment:
Q  139 tccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttcaggtttgaattctaatgg 238  Q
    ||||||| |||||||||||||| || ||||||||||  ||||||  || ||||||| |||| ||||| |||||||||| ||| |||||||| ||||| ||    
T  4306034 tccttctaccacttccaaatggtaataactcaaaatgatgacccttaacatcaacacctttatgagtagtaagaaaccgttctggtttgaactctaaagg 4305935  T
Q  239 atctggccaaaccctagggtctctatgaatcttccatagatt 280  Q
     |||  ||||||| |||| ||  |||| ||||||||||||||    
T  4305934 ttctaaccaaaccttaggatcagtatggatcttccatagatt 4305893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 298
Target Start/End: Original strand, 5804121 - 5804391
Alignment:
Q  28 cttcagtcaaatcaattgattcaggagatagattcaagatgtcaaaagaatgcaagaaattagctagaatataatgaagcatatgcaaaccaagggatat 127  Q
    ||||||||| ||||||   |||||| | | |||| ||||| ||||| |||||||| ||| |||||||| || |||| | ||| || |  ||||   ||||    
T  5804121 cttcagtcatatcaataagttcaggtgttggatttaagatatcaaaggaatgcaaaaaactagctagagtaaaatgcaccatttgaagtccaaaacatat 5804220  T
Q  128 tccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttcaggtttg 227  Q
    ||||| |||  ||||||| ||||||||||||||    |  |||||||  | ||||| || ||||| |||||| ||||| |||||||||||||| || ||     
T  5804221 tccaggacatttccttctaccacttccaaatggttgtagttcaaaatgattacccctaacatcaatatctttatgagttgtaagaaacctttctggctta 5804320  T
Q  228 aattctaatggatctggccaaaccctagggtctctatgaatcttccatagatttggcatcaatcgagttcc 298  Q
    || |||||||||| ||||||||| ||| | ||| | || |||||||| |||||||  || |||||||||||    
T  5804321 aaatctaatggatttggccaaacactaagatctgtttggatcttccaaagatttgtgattaatcgagttcc 5804391  T

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