View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15864_low_26 (Length: 388)

Name: NF15864_low_26
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15864_low_26
NF15864_low_26
[»] chr7 (7 HSPs)
chr7 (1-156)||(33997636-33997790)
chr7 (1-156)||(47383045-47383200)
chr7 (76-131)||(6887379-6887434)
chr7 (76-143)||(10358640-10358707)
chr7 (156-195)||(33997573-33997612)
chr7 (53-131)||(42104637-42104715)
chr7 (158-191)||(10358703-10358736)
[»] chr4 (8 HSPs)
chr4 (1-147)||(45139450-45139595)
chr4 (78-131)||(9333065-9333118)
chr4 (78-131)||(9386848-9386901)
chr4 (76-131)||(27409241-27409296)
chr4 (53-122)||(25110843-25110912)
chr4 (1-45)||(142400-142444)
chr4 (76-144)||(10255807-10255875)
chr4 (76-131)||(18462471-18462526)
[»] chr3 (4 HSPs)
chr3 (1-156)||(1828726-1828881)
chr3 (1-156)||(50812337-50812491)
chr3 (1-156)||(50863373-50863527)
chr3 (53-119)||(48935514-48935580)
[»] chr6 (4 HSPs)
chr6 (20-156)||(26717364-26717499)
chr6 (20-156)||(11456644-11456779)
chr6 (1-143)||(28696235-28696377)
chr6 (76-131)||(33622957-33623012)
[»] chr8 (2 HSPs)
chr8 (20-156)||(32394611-32394753)
chr8 (69-122)||(2893959-2894012)
[»] chr5 (6 HSPs)
chr5 (20-143)||(23912511-23912633)
chr5 (1-143)||(29331754-29331896)
chr5 (53-131)||(18475797-18475877)
chr5 (158-195)||(18475884-18475921)
chr5 (76-131)||(30691207-30691262)
chr5 (76-131)||(30724176-30724231)
[»] chr1 (3 HSPs)
chr1 (69-143)||(48529804-48529878)
chr1 (58-122)||(16076868-16076932)
chr1 (53-120)||(35625983-35626050)
[»] chr2 (3 HSPs)
chr2 (76-143)||(19917282-19917349)
chr2 (76-122)||(1279683-1279729)
chr2 (158-191)||(1279633-1279666)
[»] scaffold0927 (1 HSPs)
scaffold0927 (76-131)||(2455-2510)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 33997790 - 33997636
Alignment:
Q  1 tagttgttcgttcaatgatttgtactttgttcgagttggtaatcggtgttcaatttaaaaatattgatttgaacaatattcaacaaataacaagtttata 100  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||| ||  |||||||||||||||||||||||||||||||||||||| |||||||||    
T  33997790 tagttgttcgatcaatgatttgtactttgttcgagttgataatcggt-ttagatttaaaaatattgatttgaacaatattcaacaaataataagtttata 33997692  T
Q  101 gtcattcgaactaaccaatgatgaactgtacgaataagaaaatatattttttcata 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33997691 gtcattcgaactaaccaatgatgaactgtacgaataagaaaatatatattttcata 33997636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 47383045 - 47383200
Alignment:
Q  1 tagttgttcgttcaatgat-ttgtactttgttcgagttggtaatcggtgttcaatttaaaaatattgatttgaacaatattcaacaaataacaagtttat 99  Q
    |||||||||| ||||| || ||||||||||| ||||||| |||||||| |   |||||||||||||| ||||||| |||||||||||||||||||| |||    
T  47383045 tagttgttcgatcaattatcttgtactttgtccgagttgataatcggt-taagatttaaaaatattggtttgaactatattcaacaaataacaagtctat 47383143  T
Q  100 agtcattcgaactaaccaatgatgaactgtacgaataagaaaatatattttttcata 156  Q
    |||||||||||| |||||||||| || ||| |  |||||||||||||| ||||||||    
T  47383144 agtcattcgaacgaaccaatgataaaatgtgccgataagaaaatatatattttcata 47383200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 6887434 - 6887379
Alignment:
Q  76 atattcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtac 131  Q
    |||||||||||||||||| ||| |||||||| ||||||||||||||| || |||||    
T  6887434 atattcaacaaataacaaatttgtagtcattggaactaaccaatgataaaatgtac 6887379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 10358640 - 10358707
Alignment:
Q  76 atattcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtacgaataagaaaat 143  Q
    |||||||||||||||||| ||| |||||||| ||||||||||||||| || | ||| | |||||||||    
T  10358640 atattcaacaaataacaaatttgtagtcattggaactaaccaatgataaaatttactagtaagaaaat 10358707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 33997612 - 33997573
Alignment:
Q  156 aaaaaattaagctccatcactatttttggcccacccaaga 195  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  33997612 aaaaaattaagctccatcactatttatggcccacccaaga 33997573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 42104637 - 42104715
Alignment:
Q  53 atttaaaaatattgatttgaacaatattcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtac 131  Q
    |||| ||||||| | ||||||  |||||||||||||||||| ||| |||||||| ||| ||||||||||| || |||||    
T  42104637 attttaaaatatcggtttgaattatattcaacaaataacaaatttgtagtcattggaagtaaccaatgataaaatgtac 42104715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 10358703 - 10358736
Alignment:
Q  158 aaaattaagctccatcactatttttggcccaccc 191  Q
    ||||||||||||||||||||||| ||||||||||    
T  10358703 aaaattaagctccatcactatttatggcccaccc 10358736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 45139595 - 45139450
Alignment:
Q  1 tagttgttcgttcaatgatttgtactttgttcgagttggtaatcggtgttcaatttaaaaatattgatttgaacaatattcaacaaataacaagtttata 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45139595 tagttgttcgatcaatgatttgtactttgttcgagttggtaatcggt-tcaaatttaaaaatattgatttgaacaatattcaacaaataataagtttata 45139497  T
Q  101 gtcattcgaactaaccaatgatgaactgtacgaataagaaaatatat 147  Q
    |||||||||  ||||||||||||||  ||||||||||||||||||||    
T  45139496 gtcattcgagttaaccaatgatgaatcgtacgaataagaaaatatat 45139450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 9333118 - 9333065
Alignment:
Q  78 attcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtac 131  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| || |||||    
T  9333118 attcaacaaataacaaatttatagtcattggaactaaccaatgataaaatgtac 9333065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 9386901 - 9386848
Alignment:
Q  78 attcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtac 131  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| || |||||    
T  9386901 attcaacaaataacaaatttatagtcattggaactaaccaatgataaaatgtac 9386848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 27409296 - 27409241
Alignment:
Q  76 atattcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtac 131  Q
    |||||||||||||||||| ||| |||||||| ||||||||||||||| || |||||    
T  27409296 atattcaacaaataacaaatttgtagtcattggaactaaccaatgataaaatgtac 27409241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 25110843 - 25110912
Alignment:
Q  53 atttaaaaatattgatttgaacaatattcaacaaataacaagtttatagtcattcgaactaaccaatgat 122  Q
    |||| |||||| || ||||||  |||||||||||||||||| ||||| ||| || |||||||||||||||    
T  25110843 attttaaaatactggtttgaattatattcaacaaataacaaatttatggtctttggaactaaccaatgat 25110912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 142400 - 142444
Alignment:
Q  1 tagttgttcgttcaatgatttgtactttgttcgagttggtaatcg 45  Q
    |||||||| | ||||||||||||||||||||| ||||||||||||    
T  142400 tagttgttagatcaatgatttgtactttgttcaagttggtaatcg 142444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 10255807 - 10255875
Alignment:
Q  76 atattcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtacgaataagaaaata 144  Q
    |||||||||||||||||| |||||||||||| |||| ||||||| || || |||||   ||||||||||    
T  10255807 atattcaacaaataacaaatttatagtcattggaaccaaccaataataaaatgtacttgtaagaaaata 10255875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 18462471 - 18462526
Alignment:
Q  76 atattcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtac 131  Q
    |||||||||||||||||| ||| |||| ||| ||||||||||||||| || |||||    
T  18462471 atattcaacaaataacaaatttgtagtgattggaactaaccaatgataaaatgtac 18462526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 1828726 - 1828881
Alignment:
Q  1 tagttgttcgttcaatgat-ttgtactttgttcgagttggtaatcggtgttcaatttaaaaatattgatttgaacaatattcaacaaataacaagtttat 99  Q
    |||||||||| ||||| || ||||||||||| ||||||| |||||||| |   |||||||||||||| ||||||| |||||||||||||||||||| |||    
T  1828726 tagttgttcgatcaattatcttgtactttgtccgagttgataatcggt-taagatttaaaaatattggtttgaactatattcaacaaataacaagtctat 1828824  T
Q  100 agtcattcgaactaaccaatgatgaactgtacgaataagaaaatatattttttcata 156  Q
    ||||||||||||||||||||||| || |||||  |||||||||||||| ||||||||    
T  1828825 agtcattcgaactaaccaatgataaaatgtaccgataagaaaatatatgttttcata 1828881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 50812337 - 50812491
Alignment:
Q  1 tagttgttcgttcaatgat-ttgtactttgttcgagttggtaatcggtgttcaatttaaaaatattgatttgaacaatattcaacaaataacaagtttat 99  Q
    |||||||||| |||||||| |||||||||||  |||||  |||||| |  | |||||||||||| |  ||| ||| ||||||||||||||||||||||||    
T  50812337 tagttgttcgatcaatgatcttgtactttgtctgagttaataatcgattct-aatttaaaaatactagtttcaactatattcaacaaataacaagtttat 50812435  T
Q  100 agtcattcgaactaaccaatgatgaactgtacgaataagaaaatatattttttcata 156  Q
    ||| |||| |||||||||||||| || | ||| ||||| || |||||| ||||||||    
T  50812436 agttattcaaactaaccaatgataaaatataccaataa-aatatatatattttcata 50812491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 50863527 - 50863373
Alignment:
Q  1 tagttgttcgttcaatgat-ttgtactttgttcgagttggtaatcggtgttcaatttaaaaatattgatttgaacaatattcaacaaataacaagtttat 99  Q
    |||||||||| |||||||| |||||||||||  |||||  |||||| |  | |||||||||||| |  ||| ||| ||||||||||||||||||||||||    
T  50863527 tagttgttcgatcaatgatcttgtactttgtctgagttaataatcgattct-aatttaaaaatactagtttcaactatattcaacaaataacaagtttat 50863429  T
Q  100 agtcattcgaactaaccaatgatgaactgtacgaataagaaaatatattttttcata 156  Q
    ||| |||| |||||||||||||| || | ||| ||||| || |||||| ||||||||    
T  50863428 agttattcaaactaaccaatgataaaatataccaataa-aatatatatattttcata 50863373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 48935514 - 48935580
Alignment:
Q  53 atttaaaaatattgatttgaacaatattcaacaaataacaagtttatagtcattcgaactaaccaat 119  Q
    |||| ||||||| | ||||||  |||||||||||||||||| ||| |||||||| ||||||||||||    
T  48935514 attttaaaatatcggtttgaattatattcaacaaataacaaatttgtagtcattggaactaaccaat 48935580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 26717499 - 26717364
Alignment:
Q  20 ttgtactttgttcgagttggtaatcggtgttcaatttaaaaatattgatttgaacaatattcaacaaataacaagtttatagtcattcgaactaaccaat 119  Q
    ||||||||||| ||||||| |||||||| |   |||||||||||||| ||||||| ||||||||||||||| || | |||||||||||||||||||||||    
T  26717499 ttgtactttgtccgagttgataatcggt-taagatttaaaaatattggtttgaactatattcaacaaataataaatctatagtcattcgaactaaccaat 26717401  T
Q  120 gatgaactgtacgaataagaaaatatattttttcata 156  Q
    ||| || |||||  |||||||||||||| ||||||||    
T  26717400 gataaaatgtaccgataagaaaatatatattttcata 26717364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 11456779 - 11456644
Alignment:
Q  20 ttgtactttgttcgagttggtaatcggtgttcaatttaaaaatattgatttgaacaatattcaacaaataacaagtttatagtcattcgaactaaccaat 119  Q
    ||||||||||| ||||||| |||||| | |   ||||| |||||||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||     
T  11456779 ttgtactttgtccgagttgataatcgat-taagatttagaaatattggtttgaactatattcaacaaacaacaagtctatagtcattcgaactaaccaac 11456681  T
Q  120 gatgaactgtacgaataagaaaatatattttttcata 156  Q
    ||| || |||||  |||||||||||||| ||||||||    
T  11456680 gataaaatgtaccgataagaaaatatatattttcata 11456644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 28696235 - 28696377
Alignment:
Q  1 tagttgttcgttcaatgat-ttgtactttgttcgagttggtaatcggtgttca-atttaaaaatattgatttgaacaatattcaacaaataacaagttta 98  Q
    |||||||||| ||||| || |||||||||||| |||||| |||||| |  ||| ||||  ||||| || ||||||| ||||||||||||||||||||  |    
T  28696235 tagttgttcgatcaattatcttgtactttgtttgagttgataatcgat--tcagattttgaaatactggtttgaactatattcaacaaataacaagtcca 28696332  T
Q  99 tagtcattcgaactaaccaatgatgaactgtacgaataagaaaat 143  Q
    |||||||||||||||||||||||| || | |||  ||||||||||    
T  28696333 tagtcattcgaactaaccaatgataaaatatacttataagaaaat 28696377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 33623012 - 33622957
Alignment:
Q  76 atattcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtac 131  Q
    |||||||||||||||||| | | |||||||| ||||||||||||||| || |||||    
T  33623012 atattcaacaaataacaaatatgtagtcattggaactaaccaatgataaaatgtac 33622957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 32394753 - 32394611
Alignment:
Q  20 ttgtactttgttcgagttggtaatcggtgttcaatttaaaaatattgatttgaacaatattcaacaa-------ataacaagtttatagtcattcgaact 112  Q
    ||||||||||| ||||||| |||||||| |  ||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||    
T  32394753 ttgtactttgtccgagttgataatcggt-tcaaatttaaaaatattgatttgaactatattcaacaatcaacaaataacaagtttatagtcattcgaact 32394655  T
Q  113 aaccaatgatgaactgtacgaataagaaaatatattttttcata 156  Q
    ||| |||||| || |||||  |||||||||||||| ||||||||    
T  32394654 aactaatgataaaatgtacctataagaaaatatatattttcata 32394611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 2894012 - 2893959
Alignment:
Q  69 ttgaacaatattcaacaaataacaagtttatagtcattcgaactaaccaatgat 122  Q
    |||||| |||||||||||||||||||| |||||| |||| ||||||||||||||    
T  2894012 ttgaactatattcaacaaataacaagtctatagttattcaaactaaccaatgat 2893959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 23912633 - 23912511
Alignment:
Q  20 ttgtactttgttcgagttggtaatcggtgttca-atttaaaaatattgatttgaacaatattcaacaaataacaagtttatagtcattcgaactaaccaa 118  Q
    |||||||||||| |||||| ||||| ||  ||| |||| |||||| || ||||||| ||||||||||||||||||||| ||||| |||||||| ||||||    
T  23912633 ttgtactttgtttgagttgataatcagt--tcagattttaaaatactggtttgaactatattcaacaaataacaagttcatagttattcgaaccaaccaa 23912536  T
Q  119 tgatgaactgtacgaataagaaaat 143  Q
    |||| || |||||  ||||||||||    
T  23912535 tgataaaatgtacttataagaaaat 23912511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 29331754 - 29331896
Alignment:
Q  1 tagttgttcgttcaatgat-ttgtactttgttcgagttggtaatcggtgttca-atttaaaaatattgatttgaacaatattcaacaaataacaagttta 98  Q
    |||||||||| ||||| || |||||||||||| |||||| |||||| |  ||| |||| |||||| |  || |||| ||||||||||||||||||||| |    
T  29331754 tagttgttcgatcaattatcttgtactttgtttgagttgataatcgtt--tcagattttaaaatactagttggaactatattcaacaaataacaagttca 29331851  T
Q  99 tagtcattcgaactaaccaatgatgaactgtacgaataagaaaat 143  Q
    ||||||||| |||||||||||||| || |||||  ||||||||||    
T  29331852 tagtcattcaaactaaccaatgataaaatgtacttataagaaaat 29331896  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 18475797 - 18475877
Alignment:
Q  53 atttaaaaatattgatttgaacaatattcaacaaata--acaagtttatagtcattcgaactaaccaatgatgaactgtac 131  Q
    |||| |||||| || ||||||  ||||||||||||||  |||| ||| |||||||||||||||||||||||| || |||||    
T  18475797 attttaaaatactggtttgaattatattcaacaaatataacaaatttgtagtcattcgaactaaccaatgataaaatgtac 18475877  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 18475884 - 18475921
Alignment:
Q  158 aaaattaagctccatcactatttttggcccacccaaga 195  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18475884 aaaattaagctccatcactatttatggcccacccaaga 18475921  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 30691262 - 30691207
Alignment:
Q  76 atattcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtac 131  Q
    |||||||||||||||||| ||| ||||||||  |||||||||||||| || |||||    
T  30691262 atattcaacaaataacaaatttgtagtcattgaaactaaccaatgataaaatgtac 30691207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 30724231 - 30724176
Alignment:
Q  76 atattcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtac 131  Q
    |||||||||||||||||| ||| ||||||||  |||||||||||||| || |||||    
T  30724231 atattcaacaaataacaaatttgtagtcattgaaactaaccaatgataaaatgtac 30724176  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 48529804 - 48529878
Alignment:
Q  69 ttgaacaatattcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtacgaataagaaaat 143  Q
    |||||| |||||||||||||||||||| |||||| ||||||||||||||||||| || |||||  ||||||||||    
T  48529804 ttgaactatattcaacaaataacaagtctatagttattcgaactaaccaatgataaaatgtacttataagaaaat 48529878  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 16076868 - 16076932
Alignment:
Q  58 aaaatattgatttgaacaatattcaacaaataacaagtttatagtcattcgaactaaccaatgat 122  Q
    ||||||||| ||||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||    
T  16076868 aaaatattggtttgaactatattcaacaaataacaagtctatagtcatttgaacaaacaaatgat 16076932  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 35625983 - 35626050
Alignment:
Q  53 atttaaaaatattgatttgaacaatattcaacaaataacaagtttatagtcattcgaactaaccaatg 120  Q
    |||| |||||| || ||||||  |||||||||||||||||| ||| |||||||||||| |||||||||    
T  35625983 attttaaaatactggtttgaattatattcaacaaataacaaatttgtagtcattcgaaataaccaatg 35626050  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 19917349 - 19917282
Alignment:
Q  76 atattcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtacgaataagaaaat 143  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||| || |||||  ||||||||||    
T  19917349 atattcaacaaataacaagtccatagtcattcaaactaaccaatgataaaatgtacttataagaaaat 19917282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 1279729 - 1279683
Alignment:
Q  76 atattcaacaaataacaagtttatagtcattcgaactaaccaatgat 122  Q
    |||||||||||||||||| ||| |||||||| |||||||||||||||    
T  1279729 atattcaacaaataacaaatttgtagtcattggaactaaccaatgat 1279683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 1279666 - 1279633
Alignment:
Q  158 aaaattaagctccatcactatttttggcccaccc 191  Q
    ||||||||||||||||||||||| ||||||||||    
T  1279666 aaaattaagctccatcactatttatggcccaccc 1279633  T

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Target: scaffold0927 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 2455 - 2510
Alignment:
Q  76 atattcaacaaataacaagtttatagtcattcgaactaaccaatgatgaactgtac 131  Q
    |||||||||||||||||| ||| ||||||||  |||||||||||||| || |||||    
T  2455 atattcaacaaataacaaatttgtagtcattgaaactaaccaatgataaaatgtac 2510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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