View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_28 (Length: 369)
Name: NF15864_low_28
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 35330681 - 35331025
Alignment:
| Q |
19 |
ttattacttactgctattgctgacaggataaagatgttcctgcagaccaccattcgccataaattcatacaccagcagcttatgattatgatcagagcag |
118 |
Q |
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| T |
35330681 |
ttattacttactgctattgctgacaggataaagatgttcctgcagaccaccattcgccataaattcatacaccagcagcttatgattatgatcagagcag |
35330780 |
T |
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| Q |
119 |
tatccaagcagtgcaagcaaatacggagaatgcaaccgacttagcaattccacctacaatgagatgcaattaatcaaccaattcgcaaaataaaatgtct |
218 |
Q |
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| T |
35330781 |
tatccaagcaatgcaagcaaatacggagaatgcaaccgacttagcaattccacctacaatgagatgcaattaatcaaccaattcgcaaaataaaatgtct |
35330880 |
T |
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| Q |
219 |
tccaaggtcactgatctctatcgaattgattgacttaatgcc--nnnnnnnnnnntcattttgatccatattctacaaattttataacaaggcaaatgaa |
316 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
35330881 |
tccaaggtcaatgatctctatcgaattcattgacttaatgccaaaaaaaaaaaaatcattatgatccatattctacagattttataacaaggcaaatgaa |
35330980 |
T |
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| Q |
317 |
gtgcatatgaaaatgtacaaacctcaactttaaactcttcttctc |
361 |
Q |
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| T |
35330981 |
gtgcatatgaaaatgtacaaacctcaactttaaactcttcttctc |
35331025 |
T |
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