View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_34 (Length: 333)
Name: NF15864_low_34
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 33485764 - 33485485
Alignment:
| Q |
1 |
gttttccacaaaagctacaccattttgcattctaattccctttccctctagcaagaagtttcttgctctcaagaagattaatgaga--agaggactcctc |
98 |
Q |
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| T |
33485764 |
gttttccacaaaagctacaccattttgcattctaattccctttctctctagcaagaggtttcttgctctcaacaagattaatgagagaagaggactcctc |
33485665 |
T |
|
| Q |
99 |
ttgaacatgaattaaacaattttttctctcgtgttctatcaacacagnnnnnnngagtggtaataggaggtgaatgattaatcaagtgaatttgatattt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33485664 |
ttgaacatgaattaaacaattttttctctcgtgttctatcaacacagaaaaaaagagtggtaataggaggtgaatgattaatcaagtgaatttgatattt |
33485565 |
T |
|
| Q |
199 |
tatcattgcaaaattgtcattttgacctttgcttaaacacatgacattgagaaattacacaataattttccaatttcgaa |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33485564 |
tatcattgcaaaattgtcattttgacctttgcttaaacacatgacattgagaaattacacaataattttccaatttcgaa |
33485485 |
T |
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