View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_35 (Length: 327)
Name: NF15864_low_35
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 24766364 - 24766664
Alignment:
| Q |
17 |
atcttccccttcctcactgatctttctttgatcatgtcttcaccttacttaatctcctggccttgtctccgatttgttgatacaccaaacaatccagttt |
116 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
24766364 |
atcttccccttcctcaccgatctttctatgatcatgtcttcaccttacttaatctcctggccttgtctccgatttgttgatgtaccaaacaataaagttt |
24766463 |
T |
|
| Q |
117 |
caaaccaacataaaccacctactatcacaaaccctaaatcgaaatccatatctgaaatctctaaagatacaaccaaaaccaccacaaatgaaccatcaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24766464 |
caaaccaacataaaccacctactatcacaaaccctaaatcgaaacccatatttggaatctctacagatacaaccaaaaccaccacaaatgaaccatcaaa |
24766563 |
T |
|
| Q |
217 |
gacatcaactgtctctaaaacaactgtttcaccagatacccaacttgataccgcccaaaaacaacccaaaacttttgcttaagctttatcaaacctctgt |
316 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||||| |
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| T |
24766564 |
gacatcaattgtctctaaaacaactgtttcaccagatacccaacttgataccacccaaaaacaacccaaaacttttgctcaagctttgtcaaacgtctgt |
24766663 |
T |
|
| Q |
317 |
g |
317 |
Q |
| |
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| |
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| T |
24766664 |
g |
24766664 |
T |
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