View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15864_low_36 (Length: 326)
Name: NF15864_low_36
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 37633858 - 37634153
Alignment:
| Q |
20 |
ccaggtaacggtgctctgcatgctctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37633858 |
ccaggtaacggtgctctgcatgctctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaat |
37633957 |
T |
|
| Q |
120 |
tgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttcctggctcaccagcgacggcgaagaaagaataaccaccc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
37633958 |
tgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttcctggctcaccagcgacggcaaagaaagaataaccaccc |
37634057 |
T |
|
| Q |
220 |
aaattgtaagattggaggacctttccggggttctcgaagatgatctcaatgaaggtacggaaagtagtttgcatgacattaggtgcgatgatgatg |
315 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
37634058 |
aaattgtaagattggaggaccttttcggggttctcgaagatgatctcaatgaaggtacggaaagtagtttgcatgacattaggtgcgatggtgatg |
37634153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 37639686 - 37639981
Alignment:
| Q |
20 |
ccaggtaacggtgctctgcatgctctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37639686 |
ccaggtaacggtgctctgcatgctctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaat |
37639785 |
T |
|
| Q |
120 |
tgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttcctggctcaccagcgacggcgaagaaagaataaccaccc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37639786 |
tgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttcctggctcaccagcgacggcaaagaaagaataaccaccc |
37639885 |
T |
|
| Q |
220 |
aaattgtaagattggaggacctttccggggttctcgaagatgatctcaatgaaggtacggaaagtagtttgcatgacattaggtgcgatgatgatg |
315 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
37639886 |
aaattgtaagattggaggaccttttcggggttctcgaagatgatctcaatgaaggtacggaaagtagtttgcatgacattaggtgcgatggtgatg |
37639981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 37645060 - 37645355
Alignment:
| Q |
20 |
ccaggtaacggtgctctgcatgctctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37645060 |
ccaggtaacggtgctctgcatgctctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaat |
37645159 |
T |
|
| Q |
120 |
tgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttcctggctcaccagcgacggcgaagaaagaataaccaccc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37645160 |
tgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgtacctggctcaccagcgacggcgaagaaagaataaccaccc |
37645259 |
T |
|
| Q |
220 |
aaattgtaagattggaggacctttccggggttctcgaagatgatctcaatgaaggtacggaaagtagtttgcatgacattaggtgcgatgatgatg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
37645260 |
aaattgtaagattggaggacctttccggggttctcgaagatgatttcaatgaaggtacggaaagtagtttgcatgacattaggtgcgatggtgatg |
37645355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 37647973 - 37648268
Alignment:
| Q |
20 |
ccaggtaacggtgctctgcatgctctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37647973 |
ccaggtaacggtgctctgcatgctctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaat |
37648072 |
T |
|
| Q |
120 |
tgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttcctggctcaccagcgacggcgaagaaagaataaccaccc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
37648073 |
tgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttcctggctcaccagcgacggcaaagaaagaataaccaccc |
37648172 |
T |
|
| Q |
220 |
aaattgtaagattggaggacctttccggggttctcgaagatgatctcaatgaaggtacggaaagtagtttgcatgacattaggtgcgatgatgatg |
315 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37648173 |
aaattgtaagattggaggaccttttcggggttctcgaagatgatctcaatgaaggtacggaaagtagtttgcatgacattaggtgcgatggtgatg |
37648268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 37636772 - 37637067
Alignment:
| Q |
20 |
ccaggtaacggtgctctgcatgctctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37636772 |
ccaggtaacggtgctctgcatgctctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaat |
37636871 |
T |
|
| Q |
120 |
tgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttcctggctcaccagcgacggcgaagaaagaataaccaccc |
219 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37636872 |
tgtgtgtctgctgatggcatccagaaggttgtagcccttcctcttctctggggtccatgttcctggctcaccagcgacggcaaagaaagaataaccaccc |
37636971 |
T |
|
| Q |
220 |
aaattgtaagattggaggacctttccggggttctcgaagatgatctcaatgaaggtacggaaagtagtttgcatgacattaggtgcgatgatgatg |
315 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37636972 |
aaattgtaagattggaggaccttttcggggttctcgaagatgatctcaatgaaggtacggaaagtagtttgcatgacattaggtgcgatggtgatg |
37637067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 37650885 - 37651180
Alignment:
| Q |
20 |
ccaggtaacggtgctctgcatgctctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37650885 |
ccaggtaacggtgctctgcatgctctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaat |
37650984 |
T |
|
| Q |
120 |
tgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttcctggctcaccagcgacggcgaagaaagaataaccaccc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37650985 |
tgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgtacctggctcaccagcgacgacgaagaaagaataaccaccc |
37651084 |
T |
|
| Q |
220 |
aaattgtaagattggaggacctttccggggttctcgaagatgatctcaatgaaggtacggaaagtagtttgcatgacattaggtgcgatgatgatg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
37651085 |
aaattgtaagattggaggacctttccggggttctcgaagatgatttcaatgaaggtacggaaagtagtttgcatgacattaggtgcaatggtgatg |
37651180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 43 - 284
Target Start/End: Original strand, 32387230 - 32387471
Alignment:
| Q |
43 |
tctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatcca |
142 |
Q |
| |
|
||||| ||||| | |||||||||||| ||||||||||||||||| ||||| |||||||| || |||||||| || | |||||| ||||| | ||||||| |
|
|
| T |
32387230 |
tctgatctcaagttccacataccagcgttgtcgaatgtcaacataattgcggcccatgacttggggaacacttgcactgtgtgcctgctcactgcatcca |
32387329 |
T |
|
| Q |
143 |
aaaggttgtagcccttcctcttctctggggtccatgttcctggctcaccagcgacggcgaagaaagaataaccacccaaattgtaagattggaggacctt |
242 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||| | ||||||||| |||| |||||||||||||| |||||| ||||||||||||| |||| |||||| |
|
|
| T |
32387330 |
aaaggttgtagttctttctcttctctggtgtccatttgcctggctcaacagccacggcgaagaaagagtaaccatccaaattgtaagactggatgacctt |
32387429 |
T |
|
| Q |
243 |
tccggggttctcgaagatgatctcaatgaaggtacggaaagt |
284 |
Q |
| |
|
| |||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
32387430 |
tgtagggttctcgaagatgatctcaacgaaggtgcggaaagt |
32387471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 32380867 - 32380956
Alignment:
| Q |
42 |
ctctgacctcaattgccacataccagcattgtcgaatgtcaacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgct |
131 |
Q |
| |
|
|||||||||||| | ||||| ||| | |||||||||| |||||| ||||||||||||||||| || || || ||||| ||||||||||| |
|
|
| T |
32380867 |
ctctgacctcaaattccacactccaacgttgtcgaatgacaacattattgcagcccatgattttggaaatacttgaatggtgtgtctgct |
32380956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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