View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_38 (Length: 320)
Name: NF15864_low_38
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 11440458 - 11440173
Alignment:
| Q |
19 |
gcagcacacagtttctcttcaatcaatcatcacttgcaggtttctactctctagtgtgatcatttgccttaacatgcannnnnnnataatttcttctttt |
118 |
Q |
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| T |
11440458 |
gcagcacacagtttctcttcaatcaatcatcacttgcaggtttctactctctagtgtgatcatttgccttaacatgcatttttttataatttcttctttt |
11440359 |
T |
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| Q |
119 |
gtcttaaaacatgcaaagttagaacctttcatgcatattcttaactgggtacttaacaatatttatagaatttatcatgttaattagatcatattaattg |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11440358 |
gtcttaaaacatgcaaagttagaatctttcatgcatattcttaactgggtacttaacattatttatagaatttatcatgttaattagatcatattaattg |
11440259 |
T |
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| Q |
219 |
gtgttctgtgtttatctcattgtgattggttttgcctctataagctaaaattttactgtttttatttcttttgattgtgttcaaac |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11440258 |
gtgttctgtgtttatctcattgtgattggttttgcctctataagctaaaattttactgtttttatttcttttgattgtgttgaaac |
11440173 |
T |
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