View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_40 (Length: 307)
Name: NF15864_low_40
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 41936662 - 41936949
Alignment:
| Q |
16 |
ttttccatggaacaaatagacaatgccagtggtattatgctaattaatagacaagtggattaatgatgtaagggaaggaaattgaaaatctggggtgaag |
115 |
Q |
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| T |
41936662 |
ttttccatggaacaaatagacaatgccagttgtattatgctaattagtagacaagtggattaatgatgtaagggaaggaaattgaaaatctggggtgaag |
41936761 |
T |
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| Q |
116 |
gagagagccacaatccggacaaccagtctaactgcagaatccttccccacaaggccacaacaattattggaaaatcttaagttatcgaatcaccatatta |
215 |
Q |
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| T |
41936762 |
gagagagccacaatccagacaaccagtctaactgcagaatccttccccacaaggccacaacaattattagaaaatcttaagttatcgaatcaccatatta |
41936861 |
T |
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| Q |
216 |
actgtagtacacaaactgttaacaacttttggtatttaatgtaatgcatacttttgcaggtagacaatatcctaggcctatgcttctc |
303 |
Q |
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| T |
41936862 |
actgtagtacacaaactgttaacaacttttggtatttaatgtaatgcatacttttgcaggtagacaatatcctaggcccatgattctc |
41936949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 23111738 - 23111594
Alignment:
| Q |
17 |
tttccatggaacaaatagacaatgccagtggtattatgctaattaatagacaagtggattaatgatgtaagggaaggaaattgaaaatctggggtgaagg |
116 |
Q |
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| T |
23111738 |
tttccatggaacaaatagatagtgtctgtggtattacgctaattagtagacgagtggattaatggtgtaagggtcggaaattg-aaatcctgggtgaagg |
23111640 |
T |
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| Q |
117 |
agagagccacaatccggacaaccagtctaactgcagaatccttccc |
162 |
Q |
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| T |
23111639 |
agagagccacgatccaaacaaccggtctaactgcagaatccgtccc |
23111594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 4304017 - 4303939
Alignment:
| Q |
84 |
taagggaaggaaattgaaaatctggggtgaaggagagagccacaatccggacaaccagtctaactgcagaatccttccc |
162 |
Q |
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| T |
4304017 |
taagggaaggaaattgaaattctggggtgaaggagagagccacaatccatactaccagtctaactgcagaatccttccc |
4303939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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