View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15864_low_41 (Length: 299)
Name: NF15864_low_41
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 59 - 283
Target Start/End: Original strand, 26518124 - 26518348
Alignment:
| Q |
59 |
aattatgtgtgttcgcccaaatggttgtgaccacctaagacttgctagctcagaaagtgttacaatacgagtaatttaccaatgaagtagatctcctgtc |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26518124 |
aattatgtgtgttcgcccaaatggttgtgaccacctaagacttgctagctcagaaagtgttacaatatgagtaatttaccaatgaagtagatctcctgtc |
26518223 |
T |
|
| Q |
159 |
acagtaaactctcatgaatatgtcaaacaaacaacctctatgtacattatattaatttgtaaaccctaagaagataattctctccaatctttcacacaaa |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26518224 |
acagtaaactctcatgaatatgtcaaacaaacaacctctgtgtacattatattaatttgtaaaccctaagaagataattctctccaatctttcacacaaa |
26518323 |
T |
|
| Q |
259 |
taaatagtgtgctttcggtcattaa |
283 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
26518324 |
taaatagtgtgctttcggtcattaa |
26518348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 30375179 - 30375301
Alignment:
| Q |
83 |
ttgtgaccacctaagacttgctagctcagaaagtgttacaatacgagtaatttaccaatg-aagtagatctcctgtcacagtaaactctcatgaatatgt |
181 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||| ||||| |||||||| |||||| ||||||||||||| ||||| |||||||||| ||| |||| |
|
|
| T |
30375179 |
ttgtgaccaactaagactcactagctca-aaagtgttgcaatatgagtaattaaccaatccaagtagatctcctatcacactaaactctcaggaacatgt |
30375277 |
T |
|
| Q |
182 |
caaacaaacaacctctatgtacat |
205 |
Q |
| |
|
||| |||||||||||| |||||| |
|
|
| T |
30375278 |
caattaaacaacctctacgtacat |
30375301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University