View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15864_low_42 (Length: 296)
Name: NF15864_low_42
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 3686584 - 3686306
Alignment:
| Q |
20 |
aatccggacatgccctattttgcatttggatgaaggtcgtatttctccaaacaacgaagtggaatttgaaggaattggatgaagggggatagcaagatcg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3686584 |
aatccggacatgccctattttgcatttggatgaaggtcgtatttctccaaacagcgaagtggaatttgaaggaattggatgaagggggatagcaagatcg |
3686485 |
T |
|
| Q |
120 |
taaaacaaagttg------nnnnnnnnnnnnnnncttcttcttcattgtatcatcatttgaaagggatcttgtgcttttgttttctaaattgttcttact |
213 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3686484 |
taaaacaaagttgtttttcctttttttttctttttttctttttcattgtatcatcatttgaaagggatcttgtgcttttgttttctaaattgttcttact |
3686385 |
T |
|
| Q |
214 |
atgttagtactatatatggtttatgccat------atatcatc-gtttcatgtctatcttattattatcatcgtttcat |
285 |
Q |
| |
|
||||||||| ||||||||||||||||| | || |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3686384 |
atgttagtattatatatggtttatgccttttgttcattacatctgtttcatgtctatcttattattatcatcgtttcat |
3686306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 3687028 - 3687100
Alignment:
| Q |
163 |
atcatcatttgaaagggatcttgtgcttttgttttct-aaattgttcttactatgttagtactatatatggtttat |
237 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3687028 |
atcatcatttgaaagggatcatgtgcttttcttttttaaaattgttcttactatgttag---tatatatggtttat |
3687100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 41979749 - 41979687
Alignment:
| Q |
162 |
tatcatcatttgaa---agggatcttgtgcttttgttttctaaattgttcttactatgttagt |
221 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
41979749 |
tatcatcatttgaatgaagggatcaggtgcatttgtttattaaattgttcttactatgttagt |
41979687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 4432462 - 4432410
Alignment:
| Q |
166 |
atcatttgaaagggatcttgtgcttttgttttctaaattgttcttactatgtt |
218 |
Q |
| |
|
|||||||||| |||||| |||| || | |||||||||||||||||||||||| |
|
|
| T |
4432462 |
atcatttgaaggggatcatgtgaattggctttctaaattgttcttactatgtt |
4432410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University