View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15864_low_46 (Length: 268)

Name: NF15864_low_46
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15864_low_46
NF15864_low_46
[»] chr3 (2 HSPs)
chr3 (142-253)||(53161211-53161322)
chr3 (11-76)||(53161080-53161145)
[»] chr7 (5 HSPs)
chr7 (142-243)||(45631913-45632013)
chr7 (143-241)||(26643428-26643526)
chr7 (11-76)||(45632079-45632144)
chr7 (151-231)||(18565799-18565879)
chr7 (11-76)||(26643591-26643657)
[»] chr4 (2 HSPs)
chr4 (142-242)||(51032864-51032964)
chr4 (151-231)||(18809196-18809276)
[»] chr6 (2 HSPs)
chr6 (142-250)||(7368238-7368336)
chr6 (11-76)||(7368402-7368467)
[»] chr2 (3 HSPs)
chr2 (142-220)||(39905406-39905483)
chr2 (151-231)||(44483371-44483451)
chr2 (151-231)||(24072087-24072167)
[»] scaffold0164 (1 HSPs)
scaffold0164 (151-227)||(16551-16627)
[»] chr5 (1 HSPs)
chr5 (151-223)||(19833692-19833764)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 142 - 253
Target Start/End: Original strand, 53161211 - 53161322
Alignment:
Q  142 tatcatagaaaagaaattagatttcaagtcacagcctttgatttgaaacatgccatagaatttaccatttcctttcaactcctccccctttagttatttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||    
T  53161211 tatcatagaaaagaaattagatttcaagtcacagcctttgatttgaaacatgccatagaatttaccagttactttcaactcctccccctttagttatatt 53161310  T
Q  242 ttggttatctct 253  Q
    ||||||||||||    
T  53161311 ttggttatctct 53161322  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 53161080 - 53161145
Alignment:
Q  11 atgaagtcctagtgacaaaatacgtctcttcctttttcagcaatagtactcacggttcttgttgat 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  53161080 atgaagtcctagtgacaaaatacgtctcttcctttttcagcaataatactcacggttgttgttgat 53161145  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 45632013 - 45631913
Alignment:
Q  142 tatcatagaaaagaaattagatttcaagtcacagcctttgatttgaaacatgccatagaatttaccatttcctttcaactcctccccctttagttatttt 241  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  45632013 tatcatagaaaagaaattagatttcaagtcacaacctttgatttaaaa-atgccatagaatttaccatttcatttcaactccttcccctttagttatttt 45631915  T
Q  242 tt 243  Q
    ||    
T  45631914 tt 45631913  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 26643526 - 26643428
Alignment:
Q  143 atcatagaaaagaaattagatttcaagtcacagcctttgatttgaaacatgccatagaatttaccatttcctttcaactcctccccctttagttatttt 241  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||| ||||    
T  26643526 atcatagaaaagaagttagattgcaagtcacaacctttgatttgaaacatgccatggaatttaccatttcctttcaactcctttccctttagttttttt 26643428  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 45632144 - 45632079
Alignment:
Q  11 atgaagtcctagtgacaaaatacgtctcttcctttttcagcaatagtactcacggttcttgttgat 76  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  45632144 atgaagtcctagtgacaaaatacgtctcttcatttttcagcaatagtactcacggttgttgttgat 45632079  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 18565879 - 18565799
Alignment:
Q  151 aaagaaattagatttcaagtcacagcctttgatttgaaacatgccatagaatttaccatttcctttcaactcctccccctt 231  Q
    |||| ||||| ||||||||||| | ||||| |||||||| | |||||||||||| ||||||||||||||||||||||||||    
T  18565879 aaagtaattaaatttcaagtcataacctttaatttgaaatacgccatagaattttccatttcctttcaactcctccccctt 18565799  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 26643657 - 26643591
Alignment:
Q  11 atgaagtcctagtgacaaaatacg-tctcttcctttttcagcaatagtactcacggttcttgttgat 76  Q
    |||||||| ||||| ||||| ||| |||||||| ||||||||||||||||||||| || ||||||||    
T  26643657 atgaagtcgtagtggcaaaacacggtctcttcccttttcagcaatagtactcacgattgttgttgat 26643591  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 51032864 - 51032964
Alignment:
Q  142 tatcatagaaaagaaattagatttcaagtcacagcctttgatttgaaacatgccatagaatttaccatttcctttcaactcctccccctttagttatttt 241  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||  |||||||||| ||||    
T  51032864 tatcatagaaaagaagttagattgcaagtcacaacctttgatttgaaacatgccataaaatttgccatttcctttcaactcctttccctttagttttttt 51032963  T
Q  242 t 242  Q
    |    
T  51032964 t 51032964  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 18809276 - 18809196
Alignment:
Q  151 aaagaaattagatttcaagtcacagcctttgatttgaaacatgccatagaatttaccatttcctttcaactcctccccctt 231  Q
    |||| ||||| ||||||||||| | ||||| |||||||||| | |||||||||| ||||||||||||||||||||||||||    
T  18809276 aaagtaattaaatttcaagtcataacctttaatttgaaacacgtcatagaattttccatttcctttcaactcctccccctt 18809196  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 7368336 - 7368238
Alignment:
Q  142 tatcatagaaaagaaattagatttcaagtcacagcctttgatttgaaacatgccatagaatttaccatttcctttcaactcctccccctttagttatttt 241  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||    
T  7368336 tatcatagaaaagaaattagatttcaagtcac----------ttgaaacatgccatacaatttaccatttcctttcaactcctctccctttagttttttt 7368247  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 7368467 - 7368402
Alignment:
Q  11 atgaagtcctagtgacaaaatacgtc-tcttcctttttcagcaatagtactcacggttcttgttgat 76  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||||    
T  7368467 atgaagtcctagtgacaaa-tacggcctcttcctttttcagcaatagtactcacggttgttgttgat 7368402  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 39905483 - 39905406
Alignment:
Q  142 tatcatagaaaagaaattagatttcaagtcacagcctttgatttgaaacatgccatagaatttaccatttcctttcaac 220  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  39905483 tatcatagaaa-gaaattagatttcaagtcacaacctttgattttaaacatgctatagaatttaccatttcctttcaac 39905406  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 44483371 - 44483451
Alignment:
Q  151 aaagaaattagatttcaagtcacagcctttgatttgaaacatgccatagaatttaccatttcctttcaactcctccccctt 231  Q
    |||| ||||| ||||||||||| | ||||| |||||||||| |||||||||||| | ||||||||||||||||||||||||    
T  44483371 aaagtaattaaatttcaagtcataacctttaatttgaaacacgccatagaattttcaatttcctttcaactcctccccctt 44483451  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 24072167 - 24072087
Alignment:
Q  151 aaagaaattagatttcaagtcacagcctttgatttgaaacatgccatagaatttaccatttcctttcaactcctccccctt 231  Q
    |||| ||||| ||||||||||| | ||||| |||||||||| ||||||||||||  ||||||||||||||| |||||||||    
T  24072167 aaagtaattaaatttcaagtcataacctttaatttgaaacacgccatagaatttttcatttcctttcaacttctccccctt 24072087  T

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Target: scaffold0164 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 16627 - 16551
Alignment:
Q  151 aaagaaattagatttcaagtcacagcctttgatttgaaacatgccatagaatttaccatttcctttcaactcctccc 227  Q
    |||| ||||| ||||||||||| | ||||| |||||||||| ||||||||||||  |||||||||||||||||||||    
T  16627 aaagtaattaaatttcaagtcataacctttaatttgaaacacgccatagaatttttcatttcctttcaactcctccc 16551  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 19833764 - 19833692
Alignment:
Q  151 aaagaaattagatttcaagtcacagcctttgatttgaaacatgccatagaatttaccatttcctttcaactcc 223  Q
    |||| ||||| ||||||||||| | ||||| |||||||||| |||||||||||| ||||||||||||||||||    
T  19833764 aaagtaattaaatttcaagtcataacctttaatttgaaacacgccatagaattttccatttcctttcaactcc 19833692  T

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