View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_47 (Length: 266)
Name: NF15864_low_47
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 31516274 - 31516524
Alignment:
| Q |
9 |
caagaaaatataaaggtggagcttggtctactttcttttactaataataattaaaagtatatcatcttgttctaatttcgagtccatatttctaagaact |
108 |
Q |
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| T |
31516274 |
caagaaaatataaaggtggagcgtggtctactttcttttactaataataattaaaagtatatcatcttgttccaatttcgagtccatatttctaagaact |
31516373 |
T |
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| Q |
109 |
caaagaaaatgctggaaaaacaaatgtggatgcatactcgtaaattacaattattactaaaaaag-----------acatacaatttttgcttatatttc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31516374 |
caaagaaaatgctggaaaaacaaatgtggatgcatactcgtaaattacaattattactaaaaaagacaatagttaaacatacaatttttgcttatatttc |
31516473 |
T |
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| Q |
198 |
attatagagtgagtaactgcttagattacaacaatgaaagttatttgatta |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31516474 |
attatagagtgagtaactgcttagattacaacaatgaaagttatttgatta |
31516524 |
T |
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