View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_48 (Length: 259)
Name: NF15864_low_48
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 41703722 - 41703503
Alignment:
| Q |
31 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga |
130 |
Q |
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| T |
41703722 |
aagaagattttcttttgactctgtcaactgcattggaaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga |
41703623 |
T |
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| Q |
131 |
acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccacca |
230 |
Q |
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| T |
41703622 |
acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccacca |
41703523 |
T |
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| Q |
231 |
gctggtccaaaaagagatat |
250 |
Q |
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| T |
41703522 |
gctggtccaacaagagatat |
41703503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 250
Target Start/End: Original strand, 41467414 - 41467644
Alignment:
| Q |
26 |
gctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcg------ |
119 |
Q |
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| T |
41467414 |
gctgaaagaaaattttcttttgacagtgtcaactgcattgccaaatttgcttttttgttgggttgtcagggcccctgatgaacttggctcttcaatcttc |
41467513 |
T |
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| Q |
120 |
---gtgattccagaacatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtt |
216 |
Q |
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| T |
41467514 |
acagtgattccaaaactagctttcttttcatgtattccttgaggcatagattgatcatcatcgt---caaggtttatgatctcaatctcattttccagtt |
41467610 |
T |
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| Q |
217 |
tcagacttccaccagctggtccaaaaagagatat |
250 |
Q |
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| T |
41467611 |
tcactcttccaccggctggtccaaaaagagatat |
41467644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 41513161 - 41513223
Alignment:
| Q |
31 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca |
93 |
Q |
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| T |
41513161 |
aagaaaattttcttttaacagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca |
41513223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 41522096 - 41522158
Alignment:
| Q |
31 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca |
93 |
Q |
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| T |
41522096 |
aagaaaattttcttttaaaagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca |
41522158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 41513268 - 41513381
Alignment:
| Q |
135 |
gctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccaccagctg |
234 |
Q |
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| T |
41513268 |
gctttcttttcatgtactcctcgagacatagacccaacatcgtcgtcgtcaaggtatatgacctcaatattcttatccagtttcactcttccactagctg |
41513367 |
T |
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| Q |
235 |
gtccaaaaagagat |
248 |
Q |
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| T |
41513368 |
atacaaaaagagat |
41513381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 41506911 - 41506970
Alignment:
| Q |
26 |
gctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg |
85 |
Q |
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| T |
41506911 |
gctgaaagaaaattttcttttgaccgtgtcaactgcatttgcaaacttggttttttgttg |
41506970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 33078159 - 33078232
Alignment:
| Q |
177 |
tcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccaccagctggtccaaaaagagatat |
250 |
Q |
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| T |
33078159 |
tcgttgtcaaggtttatgacctccatatcctttttcaatttcaatcttccaccaactggtacaaaaagagatat |
33078232 |
T |
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