View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_49 (Length: 258)
Name: NF15864_low_49
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 32644021 - 32643857
Alignment:
| Q |
16 |
ataaggagtggatggttacaatgtgaaggtacattcttattcttatgatagtgagtgatataacgttctaatcataaatttatataacaccttacatatt |
115 |
Q |
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| T |
32644021 |
ataaggagtggatggttacaatgtgaaggtacattcttattcttatgatagtgagtgatataacgttctaatcataaatttatataacaccttacatatt |
32643922 |
T |
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| Q |
116 |
gaacatggaagtagaaatgatatactgataggcacaaaaacttgcattaaaattcccattcgcta |
180 |
Q |
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| T |
32643921 |
gaacatggaagtagaaatgatatactgataggtacaaaaacttgcattaaaattcccattcgcta |
32643857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 32643713 - 32643636
Alignment:
| Q |
164 |
aaaattcccattcgctaatagtacgtaaaatatttttctatgtaaacatcttagaaaattgttgttcacacatttcat |
241 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32643713 |
aaaattctcattcgctaatagtacgtaaaatatttttctattaaaacatcttagaaaattgttgttcacacatttcat |
32643636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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