View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15864_low_55 (Length: 236)
Name: NF15864_low_55
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_55 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 40195567 - 40195347
Alignment:
| Q |
1 |
aacatcttctatgtcatatggctccacaccccatgcttcaacttccctttttaacaatttggataccactgaacaactctcagggccaacatgcaagata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40195567 |
aacatcttctatgtcatatggctccacaccccatgcttcaacttccccttttaacaatttggataccactgaacaactctcagggccaacatgcaagata |
40195468 |
T |
|
| Q |
101 |
tttttcatattttcaccatatacattcttcaaaataggaattacactttgaacttcaaatgtgcatgaaaaatcacctacaagatatagcaaaacaagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40195467 |
tttttcatattttcaccatatacattcttcaaaataggaattacactttgaacttcaaatgtgcatgaaaaatcacctacaagatataacaaaacaagat |
40195368 |
T |
|
| Q |
201 |
gttac--atagtcaccaattt |
219 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
40195367 |
gttacatatagtcaccaattt |
40195347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University